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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
10051-10100 / 86044 show all
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7832
99.8930
95.7607
54.8681
280132801124124
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
40.8005
87.2340
26.6272
32.1285
41645124115
92.7419
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
69.0773
96.1442
0127712470
56.4516
eyeh-varpipeINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
69.0773
96.1442
0127712470
56.4516
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0155
99.8736
96.2253
56.0241
316143161124122
98.3871
egarrison-hhgaINDELI1_5HG002compoundhethet
88.5536
91.2941
85.9729
82.4603
7767476012468
54.8387
egarrison-hhgaINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.9478
97.9351
97.9605
73.1911
5976126595612448
38.7097
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50het
92.3980
87.5241
97.8468
61.7037
5458778563512411
8.8710
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
ndellapenna-hhgaINDELI6_15HG002complexvar*
96.1681
95.0125
97.3521
56.1640
4553239455912474
59.6774
ltrigg-rtg2SNPtvmap_sirenhet
99.1276
98.6962
99.5628
47.7162
28236373282411244
3.2258
mlin-fermikitINDELD1_5map_l100_m1_e0homalt
78.9341
78.8851
78.9831
76.7350
467125466124118
95.1613
mlin-fermikitINDELD1_5map_l100_m2_e0homalt
79.5902
79.5417
79.6388
77.9587
486125485124118
95.1613
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
78.7955
87.4652
71.6895
43.9898
3144531412487
70.1613
ltrigg-rtg1SNP*map_l100_m1_e0het
98.9962
98.2804
99.7226
54.6285
445797804457612412
9.6774
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
89.6491
94.3079
85.4289
76.7105
72944727124122
98.3871
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
29.3005
21.5292
45.8515
79.6625
107390105124119
95.9677
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
88.8489
99.4083
80.3175
86.3311
504350612483
66.9355
gduggal-snapplatINDELI1_5map_l100_m1_e0het
81.0099
78.8932
83.2432
92.8928
6131646161243
2.4194
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
74.3375
67.6709
82.4611
55.4224
584279583124122
98.3871
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_51to200het
47.2648
48.0000
46.5517
55.5556
242610812489
71.7742
gduggal-snapfbSNP*lowcmp_SimpleRepeat_triTR_51to200*
10.1449
100.0000
5.3435
81.7294
9071242
1.6129
gduggal-snapfbSNP*map_sirenhomalt
99.0661
98.3701
99.7720
60.7462
542578995425712441
33.0645
gduggal-snapplatINDEL*map_l150_m2_e0het
79.5780
74.5033
85.3946
95.3000
67523172512419
15.3226
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
78.4722
0001240
0.0000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7832
99.8930
95.7607
54.7214
280132801124124
100.0000
raldana-dualsentieonSNPtimap_l150_m0_e0*
98.4611
98.4989
98.4234
78.1788
774311877411245
4.0323
raldana-dualsentieonINDELD1_5HG002compoundhethet
85.6766
80.3241
91.7935
77.7237
13883401387124122
98.3871
raldana-dualsentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8134
95.9085
97.7356
69.7525
53682295352124117
94.3548
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.2475
93.6213
99.0253
42.3352
69134711259812472
58.0645
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50het
98.5435
99.8700
97.2518
40.3648
4610643881249
7.2581
eyeh-varpipeSNP*map_l250_m2_e0*
98.9405
99.4800
98.4068
90.5464
784441765912412
9.6774
eyeh-varpipeSNP*map_l250_m2_e1het
98.4883
99.3731
97.6190
91.2048
52313350841248
6.4516
ciseli-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
92.4301
93.6681
91.2243
68.7320
128787128912491
73.3871
ciseli-customINDELI1_5map_l150_m1_e0het
62.5043
64.2140
60.8833
91.5127
192107193124107
86.2903
cchapple-customINDELD6_15HG002compoundhethomalt
26.1905
100.0000
15.0685
58.0460
24022124124
100.0000
ckim-gatkINDELD16_PLUS*het
97.6163
99.3985
95.8968
79.2687
314019289812470
56.4516
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7654
99.8573
95.7592
54.7998
280042800124123
99.1935
jlack-gatkINDELD1_5map_l125_m2_e0het
92.0548
99.0838
85.9570
90.8790
75777591245
4.0323
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
41.2281
82.4561
27.4854
98.2013
4710471242
1.6129
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.5955
95.4157
97.8049
67.5959
55782685525124115
92.7419
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.5955
95.4157
97.8049
67.5959
55782685525124115
92.7419
hfeng-pmm3INDELI1_5HG002compoundhethomalt
83.8462
99.3921
72.5055
83.0068
3272327124123
99.1935
hfeng-pmm3SNPtimap_sirenhet
99.6838
99.5672
99.8007
53.2950
621122706210312411
8.8710
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.2247
94.5429
97.9675
63.7557
59773455977124109
87.9032
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.2247
94.5429
97.9675
63.7557
59773455977124109
87.9032
jlack-gatkINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9991
96.8351
99.1915
73.1225
150844931509112394
76.4228
hfeng-pmm2SNP*map_l250_m1_e0*
98.5497
98.7953
98.3053
89.3707
713587713512315
12.1951
jlack-gatkINDELD1_5map_l125_m1_e0*
94.0601
98.8051
89.7500
89.3096
10751310771236
4.8781
anovak-vgINDEL*map_l250_m2_e0*
67.7533
69.7885
65.8333
96.4399
23110023712363
51.2195