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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
10001-10050 / 86044 show all
gduggal-snapplatINDELI1_5map_l100_m2_e0het
80.9130
78.6885
83.2669
93.4516
6241696271263
2.3810
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_51to200*
34.4471
27.4775
46.1538
56.0976
6116110812689
70.6349
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
7.3529
85.3132
00101264
3.1746
gduggal-snapvardINDELC1_5lowcmp_SimpleRepeat_quadTR_51to200het
0.0000
0.0000
7.3529
85.0549
00101264
3.1746
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
50.1596
42.9630
60.2524
58.3990
587719112619
15.0794
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
51.6683
38.0989
80.2508
24.4970
501814512126126
100.0000
gduggal-snapvardINDELI1_5map_l100_m0_e0*
90.6741
94.8435
86.8559
87.7132
5152882612546
36.8000
gduggal-snapvardINDELI6_15map_sirenhet
70.4297
84.6154
60.3175
79.3713
1212219012593
74.4000
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.2467
99.6334
98.8630
62.3274
10871401086912524
19.2000
gduggal-snapplatSNPtisegduphet
98.8353
98.7116
98.9593
94.3052
118751551188612511
8.8000
ghariani-varprowlSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.8700
99.7128
98.0414
48.3490
625018625712513
10.4000
ghariani-varprowlSNPtvmap_l250_m0_e0het
88.7470
97.2028
81.6446
94.8874
5561655612512
9.6000
bgallagher-sentieonSNPtvmap_l125_m0_e0*
98.6421
99.1555
98.1340
76.7581
657556657412519
15.2000
anovak-vgINDEL*map_l250_m2_e1*
67.7462
69.9700
65.6593
96.4861
23310023912563
50.4000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
55.9029
316233162125124
99.2000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
80.4382
0001250
0.0000
asubramanian-gatkINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
80.4382
0001250
0.0000
asubramanian-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.6598
95.2648
96.0580
63.2518
30581523046125116
92.8000
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.5858
97.9822
99.1968
53.1729
154423181543812548
38.4000
jmaeng-gatkSNP*map_l250_m2_e0het
73.7629
59.8383
96.1336
96.8561
3108208631081259
7.2000
rpoplin-dv42SNPtvmap_l100_m0_e0het
98.5640
98.8507
98.2789
68.7061
713983713812550
40.0000
mlin-fermikitINDELI1_5map_siren*
83.5106
74.6755
94.7168
75.2199
22447612241125111
88.8000
mlin-fermikitSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6888
99.4087
97.9793
56.5956
6052366061125121
96.8000
mlin-fermikitSNPtvsegdup*
97.8523
97.1988
98.5147
87.3016
8293239829112550
40.0000
mlin-fermikitINDEL*map_l100_m2_e1het
74.8844
63.0388
92.2118
79.9750
1477866148012573
58.4000
mlin-fermikitINDEL*map_l150_m1_e0*
64.0388
51.4948
84.6626
83.0385
689649690125100
80.0000
mlin-fermikitINDELD1_5map_l100_m2_e1homalt
79.7254
79.6774
79.7735
78.1084
494126493125119
95.2000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
82.1422
93.3333
73.3475
65.0261
30822344125113
90.4000
ndellapenna-hhgaSNPtimap_siren*
99.5376
99.2028
99.8746
51.9628
995558009955712560
48.0000
qzeng-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
54.3940
75.8621
42.3963
99.8352
6621921252
1.6000
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_51to200het
11.0781
70.0000
6.0150
83.1858
7381251
0.8000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5741
90.8365
94.3795
65.5301
19331952099125115
92.0000
cchapple-customINDELD1_5HG002compoundhethet
97.4821
96.0069
99.0033
65.2258
16596912417125120
96.0000
ckim-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6238
99.4640
97.7977
72.6194
5567305551125111
88.8000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0003
99.8736
96.1960
56.0166
316143161125123
98.4000
ciseli-customINDELI1_5map_l150_m2_e0het
62.9373
64.4013
61.5385
92.2212
199110200125107
85.6000
ciseli-customINDELI1_5map_sirenhomalt
62.7683
50.4950
82.9235
77.4631
61260060712597
77.6000
jlack-gatkINDELD1_5map_l125_m2_e0*
94.2098
98.7752
90.0478
89.8856
11291411311256
4.8000
jlack-gatkINDELD1_5map_l125_m2_e1het
92.0567
99.0909
85.9551
90.9534
76377651255
4.0000
hfeng-pmm2SNPtimap_l125_m0_e0het
98.8238
99.1529
98.4969
78.6095
819370819112511
8.8000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9842
99.2753
98.6948
48.1764
9452699452125120
96.0000
gduggal-bwafbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
73.9449
73.7705
74.1201
54.7329
360128358125125
100.0000
gduggal-bwaplatINDELI1_5*homalt
95.8146
92.1560
99.7758
57.5165
5568847405564112599
79.2000
gduggal-bwaplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.5560
76.1304
97.6455
49.9717
518616265184125123
98.4000
eyeh-varpipeINDELI16_PLUSHG002complexvar*
52.3530
38.8846
80.0955
45.7686
509800503125124
99.2000
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5967
99.5697
99.6236
75.3470
3309314333087125100
80.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
56.0561
316233162125124
99.2000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
91.7362
85.8358
98.5078
31.2346
797513168252125116
92.8000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
91.7362
85.8358
98.5078
31.2346
797513168252125116
92.8000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.8574
99.1901
98.5270
64.5573
8328688294124111
89.5161