PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9951-10000 / 86044 show all
gduggal-snapvardINDELI6_15map_siren*
59.5493
55.7377
63.9205
78.6148
17013522512795
74.8031
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
85.4215
78.1353
94.2062
35.5484
63861787206512767
52.7559
gduggal-snapfbINDELD6_15*hetalt
74.5835
65.2679
87.0010
49.2731
53352839850127126
99.2126
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
95.5502
99.5139
91.8902
78.2560
1433714391277
5.5118
gduggal-snapfbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
95.4385
99.6385
91.5782
68.1251
1378513811278
6.2992
gduggal-snapplatINDEL*map_l100_m0_e0het
80.0362
74.4368
86.5466
93.5607
76026181712718
14.1732
ckim-isaacINDELI1_5*hetalt
89.8867
82.5636
98.6351
45.1097
924319529178127112
88.1890
dgrover-gatkSNPtvmap_l125_m1_e0het
99.0398
99.3285
98.7528
76.5217
10058681005612722
17.3228
dgrover-gatkSNPtvmap_l125_m2_e0het
99.0688
99.3488
98.7904
77.6779
10374681037212722
17.3228
dgrover-gatkSNPtvmap_l125_m2_e1het
99.0786
99.3556
98.8030
77.7194
10485681048312722
17.3228
ckim-vqsrSNPtvmap_l125_m1_e0*
69.0966
53.2030
98.5313
88.9389
8521749585201271
0.7874
ckim-vqsrSNPtvmap_l125_m2_e0het
80.8052
68.6171
98.2581
89.8954
7165327771641271
0.7874
ckim-vqsrSNPtvmap_l125_m2_e1het
80.9165
68.7672
98.2798
89.9018
7257329672561271
0.7874
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
87.8155
85.8877
89.8319
60.6862
11321861122127125
98.4252
mlin-fermikitINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
84.4639
91.8699
78.1629
66.9151
45240451126119
94.4444
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
83.9484
89.1626
79.3103
79.1581
54366483126115
91.2698
qzeng-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
77.6395
70.9330
85.7466
65.4687
59324375812694
74.6032
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
0.0000
1.5625
65.4054
0021260
0.0000
mlin-fermikitSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1773
99.3135
93.2331
71.4592
173612173612698
77.7778
jmaeng-gatkSNP*map_l250_m2_e0*
70.5188
55.3329
97.1931
96.2932
43633522436312610
7.9365
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
43.2760
32.9738
62.9412
68.5185
21443521412691
72.2222
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.6965
89.5833
83.9898
89.6733
645756611268
6.3492
ltrigg-rtg2INDEL**hetalt
97.1063
94.8330
99.4912
68.4092
23933130424639126124
98.4127
jli-customINDELI1_5HG002compoundhethomalt
83.7803
99.6960
72.2467
88.6301
3281328126125
99.2063
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.1575
94.0810
96.2589
56.4633
30201903242126118
93.6508
cchapple-customINDELI6_15*het
98.6365
97.9268
99.3566
49.5505
98252081945712691
72.2222
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
88.4490
98.2824
80.4044
77.2309
515951712619
15.0794
ckim-dragenINDEL*map_l100_m2_e0*
96.9907
97.3734
96.6111
87.1158
359697359212619
15.0794
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5866
99.8768
99.2982
57.0448
1782922178281265
3.9683
gduggal-bwavardINDELC6_15*het
73.0769
100.0000
57.5758
94.9772
7017112630
23.8095
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
58.9260
45.7207
82.8571
79.6003
60972360912621
16.6667
gduggal-bwaplatSNPtiHG002complexvarhomalt
98.4485
97.0077
99.9328
19.1570
1876745789187425126109
86.5079
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
89.8753
95.0578
85.2286
76.3056
9044772712644
34.9206
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
86.1043
94.9187
78.7879
57.8125
46725468126118
93.6508
ckim-vqsrSNPtvmap_l125_m1_e0het
80.4152
68.0822
98.2049
89.2490
6894323268931261
0.7937
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7153
99.8632
97.5936
51.6484
511075110126125
99.2063
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8151
99.8240
97.8265
57.8124
5671105671126125
99.2063
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
87.6722
83.5938
92.1690
57.0360
1498294148312681
64.2857
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
92.1912
88.4459
96.2678
41.3787
3261426325012683
65.8730
egarrison-hhgaSNPtvHG002complexvar*
99.7884
99.6287
99.9487
21.8626
24523891424526712678
61.9048
ckim-vqsrSNP*map_l125_m0_e0*
64.0727
47.4439
98.6485
91.7531
91971018891971260
0.0000
ckim-vqsrSNP*map_l125_m0_e0het
75.2621
60.9365
98.3935
91.9254
7717494777171260
0.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_diTR_51to200*
84.7851
78.2485
92.5134
54.4520
16444571557126122
96.8254
jlack-gatkINDELD16_PLUSHG002compoundhethet
80.6922
97.5309
68.8119
59.1507
39510278126121
96.0317
jlack-gatkINDELD1_5map_l125_m2_e1*
94.2377
98.7900
90.0865
89.9406
11431411451266
4.7619
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
59.1795
86.4865
44.9782
68.8011
12820103126124
98.4127
hfeng-pmm1SNP*map_l100_m1_e0het
99.4173
99.1159
99.7205
63.9471
449584014494712632
25.3968
hfeng-pmm3SNP*map_l150_m2_e0het
99.2915
99.2103
99.3729
76.6202
199741591996812613
10.3175
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
49.0421
92.7536
33.3333
92.3171
645631265
3.9683
gduggal-snapplatINDEL*map_l150_m2_e1het
79.5622
74.4589
85.4167
95.3345
68823673812619
15.0794