PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9851-9900 / 86044 show all
jmaeng-gatkINDELI16_PLUS**
97.0081
96.0953
97.9383
71.0190
6128249612812982
63.5659
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.3323
30.1494
83.7121
76.2590
6661543663129106
82.1705
egarrison-hhgaSNPtiHG002complexvarhet
99.8118
99.6651
99.9589
16.9554
313712105431371512951
39.5349
eyeh-varpipeINDEL*map_l100_m2_e1homalt
94.8575
96.1749
93.5757
84.5669
1232491879129113
87.5969
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.5449
90.4908
96.8125
75.4534
3835403391812910
7.7519
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
90.2515
91.2014
89.3212
56.4841
1078104107912986
66.6667
mlin-fermikitSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
98.8486
98.4572
99.2431
55.7060
1691226516914129121
93.7984
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
41.1619
58.5185
31.7460
42.9003
795660129126
97.6744
cchapple-customSNPtvmap_l250_m2_e0*
95.6656
95.8015
95.5301
90.2861
2761121275712924
18.6047
cchapple-customSNPtvmap_l250_m2_e0het
94.5749
95.6701
93.5045
91.5751
185684185712924
18.6047
ciseli-customINDELD1_5map_l150_m2_e0*
74.1130
68.8073
80.3053
92.8974
52523852612961
47.2868
ciseli-customINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
35.9477
45.0820
29.8913
77.7240
556755129117
90.6977
ckim-gatkSNP*map_l250_m2_e1*
70.8260
55.7155
97.1828
96.2381
44503537445012910
7.7519
ckim-gatkSNP*map_l250_m2_e1het
74.0542
60.2394
96.0909
96.7655
31712093317112910
7.7519
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.7040
83.7402
98.9310
28.6610
11526223811938129114
88.3721
ciseli-customSNP*map_l250_m0_e0homalt
78.0848
77.2655
78.9216
92.3251
48614348312986
66.6667
ckim-gatkINDELD6_15HG002compoundhethomalt
27.1186
100.0000
15.6863
71.0775
24024129128
99.2248
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
88.1577
96.3875
81.2227
77.7237
58722558129127
98.4496
rpoplin-dv42SNPtimap_l100_m0_e0*
99.1759
98.9481
99.4047
66.3363
215422292153912985
65.8915
rpoplin-dv42SNPtimap_l150_m1_e0*
99.1152
98.8890
99.3424
73.3921
194932191948912991
70.5426
gduggal-snapvardINDELD6_15map_sirenhet
75.8046
83.5714
69.3587
81.7036
2344629212984
65.1163
ghariani-varprowlSNPtvmap_l250_m0_e0*
90.3067
96.2092
85.0867
94.8490
7362973612912
9.3023
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.2537
79.1052
92.4385
53.9790
16624391577129123
95.3488
gduggal-snapplatINDEL*map_l150_m1_e0*
79.9475
72.5710
88.9932
94.5783
971367104312920
15.5039
gduggal-bwavardINDEL*map_l150_m0_e0*
85.7904
93.9689
78.9216
93.5231
4833148312924
18.6047
gduggal-bwafbSNP*func_cds*
99.6211
99.9504
99.2939
30.1552
181419181411292
1.5504
gduggal-bwafbSNP*func_cdshet
99.3985
99.9462
98.8568
33.7832
111556111551292
1.5504
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
86.5921
77.7149
97.7589
44.5846
563216155627129105
81.3953
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
61.4597
44.8804
97.4636
72.8689
266532734957129121
93.7984
eyeh-varpipeSNP*map_l250_m2_e1*
98.9222
99.4867
98.3642
90.6150
794641775712912
9.3023
eyeh-varpipeSNPtiHG002compoundhethomalt
97.1981
99.5131
94.9883
44.4780
735836244512950
38.7597
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
71.0431
92.7602
57.5658
90.6977
2051617512915
11.6279
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_quadTR_11to50het
87.8512
79.2181
98.5961
65.0515
90572376906012928
21.7054
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
90.2910
84.7806
96.5674
90.4279
3593645360112818
14.0625
gduggal-bwavardINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
59.2765
78.1250
47.7551
84.1321
1253511712889
69.5312
eyeh-varpipeSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9228
99.1388
98.7077
45.0241
1001587977712846
35.9375
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2925
99.2749
97.3294
48.4124
465534466512817
13.2812
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
36.8670
24.7423
72.2944
43.7956
96292334128127
99.2188
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
93.7151
96.2963
91.2688
89.1952
124848133812835
27.3438
ltrigg-rtg2SNP*map_l100_m2_e0het
98.8752
98.0452
99.7194
53.1503
45492907454911288
6.2500
mlin-fermikitINDELI6_15HG002complexvarhomalt
91.3948
92.8336
90.0000
56.7129
1127871152128127
99.2188
ndellapenna-hhgaSNP*map_l100_m1_e0*
99.3352
98.8536
99.8215
61.7229
715738307157512861
47.6562
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
84.4600
82.3881
86.6388
62.5342
828177830128125
97.6562
jmaeng-gatkSNP*map_l250_m2_e1*
70.7185
55.5778
97.1973
96.3060
44393548443912810
7.8125
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
88.0374
100.0000
78.6311
86.1918
469047112875
58.5938
jli-customSNP*map_l125_m0_e0*
98.9095
98.4885
99.3340
69.7637
190922931909212848
37.5000
jli-customSNPtiHG002complexvar*
99.9464
99.9180
99.9748
17.5160
50801941750797912858
45.3125
hfeng-pmm1SNP*map_l100_m2_e0het
99.4228
99.1250
99.7224
65.3363
459934064598212832
25.0000
hfeng-pmm2SNP*map_l250_m2_e0*
98.6338
98.8840
98.3849
89.8595
779788779712816
12.5000
hfeng-pmm1INDELD6_15*het
98.2571
97.6449
98.8769
58.2726
1131927311269128111
86.7188