PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9701-9750 / 86044 show all
rpoplin-dv42SNPtimap_l150_m2_e1*
99.1367
98.9191
99.3552
75.1649
204992242049513393
69.9248
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8473
99.8104
95.9599
54.4297
315963159133131
98.4962
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.7864
99.1544
98.4212
63.6442
8325718291133121
90.9774
asubramanian-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.0123
98.3920
97.6356
72.4102
5507905492133121
90.9774
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.8328
99.0038
96.6891
76.0765
38763938841332
1.5038
asubramanian-gatkINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
0.0000
0.0000
68.4086
0001330
0.0000
asubramanian-gatkINDELC6_15*het
0.0000
100.0000
0.0000
80.4124
7001330
0.0000
anovak-vgSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
89.1362
91.0282
87.3213
73.7422
9038991613346
34.5865
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_quadTR_11to50*
98.8957
98.4694
99.3257
54.3646
195583041959213345
33.8346
jpowers-varprowlSNP*func_cds*
99.3809
99.4931
99.2689
29.1793
18058921805813314
10.5263
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.9836
91.7841
96.2911
69.5456
34523093453133125
93.9850
gduggal-bwafbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.9836
91.7841
96.2911
69.5456
34523093453133125
93.9850
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
82.2975
70.7032
98.4402
61.5346
83963479839413353
39.8496
gduggal-bwaplatINDELD6_15*hetalt
82.8017
71.8008
97.7833
50.4460
586923055867133131
98.4962
gduggal-bwavardINDELD1_5map_l125_m2_e0het
91.3057
98.8220
84.8519
90.7276
755974513317
12.7820
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
71.7070
89.4928
59.8187
91.4779
247291981338
6.0150
qzeng-customINDEL*map_l100_m0_e0het
81.4136
75.5142
88.3128
92.9110
771250100513330
22.5564
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.1042
99.4409
98.7698
49.5614
10672601067813313
9.7744
ckim-dragenINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.3918
92.3695
96.5046
61.7780
36803043672133128
96.2406
ciseli-customINDEL*map_l125_m1_e0homalt
66.8206
59.2896
76.5432
87.7564
434298434133104
78.1955
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.0553
99.6017
96.5562
49.9027
3751153729133130
97.7444
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0553
99.6017
96.5562
49.9027
3751153729133130
97.7444
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.2469
84.8746
98.6537
45.5252
974717379746133101
75.9398
ckim-isaacINDELI16_PLUSHG002compoundhethet
19.1083
31.9149
13.6364
72.1014
153221133118
88.7218
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
85.4801
83.0652
88.0396
45.1406
981200979133132
99.2481
egarrison-hhgaSNP*segdup*
99.6030
99.6793
99.5269
89.4388
27977902797713340
30.0752
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.0835
99.3208
98.8474
56.8151
114067811406133125
93.9850
jlack-gatkINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9210
92.2462
93.6058
72.7642
19631651947133117
87.9699
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.2731
30.1494
83.2915
76.5745
6661543663133106
79.6992
gduggal-snapvardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
0.0000
0.0000
43.6441
89.1892
0010313336
27.0677
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
10.6667
88.8889
5.6738
90.0424
8181334
3.0075
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
62.9334
53.3333
76.7483
71.4713
440385439133119
89.4737
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
62.9334
53.3333
76.7483
71.4713
440385439133119
89.4737
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
83.8465
88.9667
79.2835
61.5799
5086350913356
42.1053
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
70.5148
79.8587
63.1285
77.4132
2265722613238
28.7879
ghariani-varprowlINDELD1_5map_l100_m0_e0*
90.5391
95.3650
86.1780
88.0700
8234082313224
18.1818
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.8567
85.0746
86.6532
64.3732
855150857132126
95.4545
gduggal-snapvardINDELD1_5map_l150_m0_e0*
83.0230
95.8478
73.2252
92.0420
2771236113221
15.9091
mlin-fermikitINDEL*map_l150_m2_e0*
64.8581
52.4858
84.8624
85.1067
739669740132104
78.7879
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
87.9554
98.8166
79.2453
88.8008
5016504132106
80.3030
qzeng-customINDELI16_PLUSHG002complexvar*
86.4583
83.8044
89.2857
60.9632
1097212110013251
38.6364
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.2010
96.5997
95.8055
76.3827
298310530151324
3.0303
ltrigg-rtg1SNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
97.7782
98.2578
97.3034
68.5775
46818347631325
3.7879
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5829
99.6423
99.5235
65.6204
27579992756913213
9.8485
raldana-dualsentieonINDELD16_PLUS**
97.3178
96.6244
98.0213
67.0307
65552296539132101
76.5152
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.5933
99.7860
95.4949
53.0674
279862798132131
99.2424
raldana-dualsentieonSNP*map_l250_m1_e0het
97.3427
97.4553
97.2304
88.8130
463412146341323
2.2727
bgallagher-sentieonINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.5086
99.3568
97.6748
72.1675
5561365545132121
91.6667
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
27.7333
20.3358
43.5897
65.7895
109427102132121
91.6667
gduggal-bwavardINDELD1_5map_l125_m1_e0het
91.0091
98.8981
84.2857
90.2155
718870813217
12.8788