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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9651-9700 / 86044 show all
gduggal-snapfbSNPtvmap_l250_m1_e0het
94.3085
95.9709
92.7027
86.6223
171572171513548
35.5556
gduggal-bwafbSNP*map_l250_m1_e0het
97.0310
96.9085
97.1537
89.8249
4608147460813533
24.4444
eyeh-varpipeINDELD6_15*hetalt
46.3037
30.5358
95.7427
56.1168
249656783036135128
94.8148
eyeh-varpipeINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.4672
95.4477
99.5740
49.7805
253712131556135135
100.0000
gduggal-bwavardINDELD1_5map_l125_m2_e0*
92.6484
96.6754
88.9435
89.1467
110538108613519
14.0741
gduggal-bwavardINDELD1_5map_l125_m2_e1het
91.2581
98.8312
84.7630
90.8034
761975113518
13.3333
gduggal-bwaplatINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
76.6225
63.6808
96.1659
75.3638
33841930338613545
33.3333
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.1118
85.3688
97.6832
88.4817
5683974569213524
17.7778
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
69.0799
55.3552
91.8541
94.6607
15041213151113431
23.1343
gduggal-bwavardINDELD1_5map_l125_m1_e0*
92.4713
96.7831
88.5274
88.5445
105335103413419
14.1791
eyeh-varpipeINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
32.5233
24.3750
48.8550
47.4950
39121128134134
100.0000
mlin-fermikitINDELI16_PLUSHG002complexvar*
84.0504
79.8319
88.7395
68.1648
10452641056134128
95.5224
mlin-fermikitSNPtimap_l125_m1_e0het
61.0167
44.2242
98.3680
59.8543
80781018880771347
5.2239
mlin-fermikitINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7368
98.6632
98.8105
55.8582
1114515111131134133
99.2537
mlin-fermikitINDEL*map_l150_m2_e1*
65.1571
52.8145
85.0279
85.1378
760679761134106
79.1045
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
82.2770
90.3226
75.5474
70.8511
47651414134133
99.2537
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
68.8811
63.9610
74.6212
70.9571
394222394134130
97.0149
jli-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.7391
98.3237
99.1580
56.4704
1577826915780134125
93.2836
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
91.6782
96.9631
86.9396
76.4300
89428892134128
95.5224
ciseli-customINDELD1_5map_l100_m0_e0*
77.3981
72.8853
82.5065
89.4982
62923463213463
47.0149
ciseli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
45.3431
47.6852
43.2203
58.3774
103113102134129
96.2687
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6391
99.8632
97.4447
51.1732
511075110134133
99.2537
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
70.6140
100.0000
54.5763
33.4086
1610161134134
100.0000
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.1287
97.8680
98.3908
64.4221
82171798193134104
77.6119
bgallagher-sentieonSNP*map_l250_m1_e0het
97.9332
98.6540
97.2228
90.1965
469164469113424
17.9104
anovak-vgINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
45.1042
39.2655
52.9825
57.7778
13921515113499
73.8806
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2216
97.3921
99.0654
77.9808
141913801420413416
11.9403
hfeng-pmm1SNP*map_l150_m2_e0*
99.3518
99.1272
99.5773
75.1179
315742783156813437
27.6119
hfeng-pmm1SNPtimap_siren*
99.7016
99.5376
99.8660
52.2018
998914649987813442
31.3433
hfeng-pmm1INDELD1_5*het
99.5580
99.2715
99.8461
55.4481
869366388694013451
38.0597
gduggal-snapfbSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.7559
98.8212
96.7133
52.5820
394047394313424
17.9104
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
94.5086
98.3261
90.9764
72.8370
135123135113468
50.7463
gduggal-snapplatSNPtisegdup*
99.0792
98.8483
99.3111
92.8755
193122251931713417
12.6866
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
gduggal-snapvardSNPtvlowcmp_SimpleRepeat_triTR_11to50het
95.2056
96.5856
93.8645
49.5961
20657320501347
5.2239
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.6293
99.8437
97.4442
51.1779
510985109134133
99.2537
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0685
99.1132
99.0238
69.1438
1363512213593134112
83.5821
ckim-vqsrINDELD6_15*homalt
98.8887
99.8735
97.9231
55.6564
631886318134131
97.7612
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1989
99.8938
96.5606
60.0492
376243762134131
97.7612
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1989
99.8938
96.5606
60.0492
376243762134131
97.7612
dgrover-gatkSNP*HG002complexvarhet
99.9434
99.9156
99.9712
18.5452
46510439346497413453
39.5522
dgrover-gatkSNPtimap_l150_m1_e0het
99.0308
99.1431
98.9188
80.0370
122641061226013429
21.6418
eyeh-varpipeINDELC1_5HG002complexvar*
90.0749
85.7143
94.9030
78.7246
612495134108
80.5970
ckim-vqsrINDEL*lowcmp_SimpleRepeat_diTR_51to200het
78.0651
92.4490
67.5545
80.7459
45337279134129
96.2687
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5826
97.8702
99.3056
66.7018
19162417191621346
4.4776
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9543
99.3915
75.2467
218891021889134133
99.2537
rpoplin-dv42SNP*HG002complexvarhet
99.8978
99.8245
99.9712
18.3215
464680817464534134101
75.3731