PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9551-9600 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7616 | 98.6343 | 98.8892 | 60.8084 | 12350 | 171 | 12197 | 137 | 115 | 83.9416 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.9630 | 95.2537 | 80.0000 | 69.7438 | 582 | 29 | 548 | 137 | 132 | 96.3504 | |
| gduggal-snapvard | SNP | * | HG002compoundhet | homalt | 89.8866 | 82.8510 | 98.2279 | 37.1566 | 8933 | 1849 | 7594 | 137 | 100 | 72.9927 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 2.8369 | 100.0000 | 1.4388 | 74.9550 | 2 | 0 | 2 | 137 | 3 | 2.1898 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 2.8369 | 100.0000 | 1.4388 | 74.9550 | 2 | 0 | 2 | 137 | 3 | 2.1898 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.0906 | 64.0796 | 82.3907 | 55.6695 | 644 | 361 | 641 | 137 | 133 | 97.0803 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 91.1836 | 98.8220 | 84.6413 | 91.0008 | 755 | 9 | 755 | 137 | 26 | 18.9781 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5464 | 99.5815 | 99.5114 | 49.8381 | 27842 | 117 | 27901 | 137 | 8 | 5.8394 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0544 | 98.5583 | 99.5556 | 65.3417 | 30694 | 449 | 30694 | 137 | 9 | 6.5693 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0544 | 98.5583 | 99.5556 | 65.3417 | 30694 | 449 | 30694 | 137 | 9 | 6.5693 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | het | 98.8912 | 99.0902 | 98.6930 | 74.4522 | 10347 | 95 | 10345 | 137 | 1 | 0.7299 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.7464 | 96.5472 | 98.9758 | 64.1922 | 13282 | 475 | 13239 | 137 | 125 | 91.2409 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.7464 | 96.5472 | 98.9758 | 64.1922 | 13282 | 475 | 13239 | 137 | 125 | 91.2409 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4506 | 61.8308 | 96.7658 | 90.3686 | 4100 | 2531 | 4099 | 137 | 8 | 5.8394 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | homalt | 67.2566 | 59.7641 | 76.8971 | 88.5455 | 456 | 307 | 456 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | homalt | 67.5872 | 60.0775 | 77.2425 | 88.5833 | 465 | 309 | 465 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 25.1366 | 95.2847 | 0 | 0 | 46 | 137 | 45 | 32.8467 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6826 | 98.0211 | 91.5640 | 77.5938 | 1486 | 30 | 1487 | 137 | 13 | 9.4891 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7673 | 99.3559 | 98.1857 | 45.9987 | 7404 | 48 | 7414 | 137 | 23 | 16.7883 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.1473 | 97.7063 | 96.5946 | 58.2763 | 3919 | 92 | 3886 | 137 | 15 | 10.9489 | |
| eyeh-varpipe | SNP | * | HG002complexvar | homalt | 99.9303 | 99.9127 | 99.9480 | 18.2871 | 288323 | 252 | 263218 | 137 | 103 | 75.1825 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | * | 92.6122 | 96.6292 | 88.9159 | 89.2090 | 1118 | 39 | 1099 | 137 | 20 | 14.5985 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | * | 58.0785 | 43.2571 | 88.3503 | 33.1438 | 927 | 1216 | 1039 | 137 | 136 | 99.2701 | |
| gduggal-bwafb | INDEL | I1_5 | * | hetalt | 90.3216 | 84.5735 | 96.9081 | 78.3569 | 9468 | 1727 | 4294 | 137 | 135 | 98.5401 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.5923 | 77.5927 | 88.2806 | 60.8637 | 1025 | 296 | 1032 | 137 | 136 | 99.2701 | |
| mlin-fermikit | SNP | * | map_l100_m0_e0 | het | 57.3538 | 40.4669 | 98.4278 | 57.0061 | 8581 | 12624 | 8577 | 137 | 4 | 2.9197 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.2297 | 99.8868 | 92.8310 | 67.6868 | 1765 | 2 | 1774 | 137 | 123 | 89.7810 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 78.1790 | 97.7444 | 65.1399 | 76.7730 | 260 | 6 | 256 | 137 | 5 | 3.6496 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 52.8122 | 77.0492 | 40.1747 | 78.2319 | 47 | 14 | 92 | 137 | 4 | 2.9197 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.1461 | 96.4333 | 91.9648 | 90.4466 | 1460 | 54 | 1568 | 137 | 36 | 26.2774 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | het | 77.8994 | 68.7185 | 89.9116 | 96.1828 | 1228 | 559 | 1221 | 137 | 110 | 80.2920 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
| ltrigg-rtg2 | INDEL | I6_15 | * | * | 98.2993 | 97.1961 | 99.4278 | 44.2481 | 24127 | 696 | 23804 | 137 | 83 | 60.5839 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0504 | 99.1851 | 96.9413 | 58.5086 | 4260 | 35 | 4342 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0353 | 98.9576 | 95.1862 | 61.9773 | 2658 | 28 | 2709 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 52.7792 | 76.2712 | 40.3509 | 76.8057 | 45 | 14 | 92 | 136 | 4 | 2.9412 | |
| qzeng-custom | SNP | tv | HG002compoundhet | het | 97.5388 | 97.4321 | 97.6458 | 58.3399 | 4553 | 120 | 5641 | 136 | 28 | 20.5882 | |
| ltrigg-rtg1 | SNP | * | map_l100_m2_e0 | het | 98.9994 | 98.3060 | 99.7027 | 57.0672 | 45613 | 786 | 45611 | 136 | 12 | 8.8235 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.1985 | 59.1093 | 51.7730 | 72.4878 | 146 | 101 | 146 | 136 | 136 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 26.0870 | 100.0000 | 15.0000 | 70.0375 | 24 | 0 | 24 | 136 | 135 | 99.2647 | |
| dgrover-gatk | INDEL | D6_15 | * | homalt | 98.8732 | 99.8735 | 97.8928 | 55.5601 | 6318 | 8 | 6318 | 136 | 134 | 98.5294 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.1733 | 99.8938 | 96.5110 | 60.0492 | 3762 | 4 | 3762 | 136 | 134 | 98.5294 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.1733 | 99.8938 | 96.5110 | 60.0492 | 3762 | 4 | 3762 | 136 | 134 | 98.5294 | |
| eyeh-varpipe | INDEL | * | segdup | * | 93.9572 | 93.0360 | 94.8968 | 96.9158 | 2378 | 178 | 2529 | 136 | 123 | 90.4412 | |
| ckim-isaac | INDEL | I1_5 | HG002compoundhet | homalt | 68.0851 | 72.9483 | 63.8298 | 82.4627 | 240 | 89 | 240 | 136 | 132 | 97.0588 | |
| asubramanian-gatk | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 46.8750 | 1 | 0 | 0 | 136 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 61.3722 | 45.0807 | 96.1020 | 31.7355 | 3267 | 3980 | 3353 | 136 | 135 | 99.2647 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | * | 67.5902 | 64.0472 | 71.5481 | 80.9182 | 326 | 183 | 342 | 136 | 91 | 66.9118 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.0965 | 99.3446 | 93.0541 | 69.3007 | 1819 | 12 | 1822 | 136 | 0 | 0.0000 | |