PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
9051-9100 / 86044 show all
bgallagher-sentieonSNPtimap_l125_m0_e0het
98.6693
99.1771
98.1668
78.4213
819568819315325
16.3399
bgallagher-sentieonSNPtvmap_l150_m2_e0het
98.6238
99.3381
97.9198
79.8967
720448720215320
13.0719
bgallagher-sentieonSNPtvmap_l150_m2_e1het
98.6417
99.3468
97.9466
79.9186
730048729815320
13.0719
asubramanian-gatkINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
0.0000
0.0000
64.5833
0001530
0.0000
astatham-gatkINDELD16_PLUS**
97.8775
98.0100
97.7454
70.7802
66491356633153104
67.9739
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.4177
98.8728
97.9668
40.4008
73688473721533
1.9608
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3287
97.7902
98.8731
68.6335
1345330413424153111
72.5490
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3287
97.7902
98.8731
68.6335
1345330413424153111
72.5490
asubramanian-gatkINDELD6_15HG002compoundhethomalt
23.8806
100.0000
13.5593
67.6417
24024153143
93.4641
asubramanian-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8288
92.9433
96.7925
52.5751
36222754617153140
91.5033
hfeng-pmm3INDEL*HG002complexvar*
99.1462
98.5027
99.7982
57.0316
75786115275648153115
75.1634
hfeng-pmm3SNP*map_l150_m2_e0*
99.4612
99.4035
99.5190
75.5411
316621903165615323
15.0327
jlack-gatkINDEL*map_l150_m2_e0het
91.3052
98.1236
85.3728
93.4833
889178931536
3.9216
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
96.0497
95.8548
96.2454
43.3162
3908169392215380
52.2876
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
80.6350
85.9929
75.9055
63.7764
48579482153100
65.3595
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
82.8586
98.6945
71.4019
83.3644
378538215393
60.7843
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.3339
96.4347
96.2334
71.2425
39221453909153129
84.3137
ckim-isaacINDEL*HG002compoundhethetalt
88.0188
79.0747
99.2444
32.7152
19911526920095153126
82.3529
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
91.8646
89.3667
94.5063
68.0289
2681319263215361
39.8693
cchapple-customSNPtimap_l250_m2_e1*
96.4747
96.0008
96.9534
90.2115
4873203486915342
27.4510
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
85.0321
87.0220
83.1312
60.9052
75111275415372
47.0588
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
94.4040
96.4646
92.4295
77.5992
2101771868153139
90.8497
ckim-gatkINDELD1_5HG002compoundhethomalt
79.0191
99.6564
65.4628
87.5701
2901290153152
99.3464
ckim-dragenSNPtimap_l250_m2_e1het
96.3677
97.2719
95.4802
91.4419
320990321115211
7.2368
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_51to200*
18.7350
81.2500
10.5882
85.7263
133181522
1.3158
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
75.6187
75.7143
75.5233
66.0841
47715346915289
58.5526
cchapple-customSNPtimap_l250_m2_e0*
96.4779
96.0264
96.9336
90.1381
4809199480515241
26.9737
cchapple-customSNPtimap_l250_m2_e1het
95.5838
95.7563
95.4120
91.7154
3159140316115241
26.9737
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8670
96.7220
99.0393
65.6223
155505271567015241
26.9737
ltrigg-rtg1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8670
96.7220
99.0393
65.6223
155505271567015241
26.9737
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
92.3815
89.1767
95.8253
57.6036
3477422348915275
49.3421
ckim-isaacSNPtiHG002complexvarhet
96.4266
93.1447
99.9482
15.3403
2931882157829334315218
11.8421
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4485
99.8241
97.1103
48.4061
510895108152151
99.3421
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.5830
99.8064
97.3892
55.2704
5670115670152151
99.3421
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
gduggal-bwavardINDELC1_5HG002compoundhethet
0.0000
0.0000
46.8531
84.4057
0013415244
28.9474
gduggal-bwavardSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
97.8028
97.6785
97.9275
46.3889
7279173718215245
29.6053
mlin-fermikitSNPtimap_l125_m2_e1het
62.3819
45.6908
98.2867
64.4551
87211036687201527
4.6053
qzeng-customSNPtvmap_l250_m2_e0*
77.9675
67.2797
92.6923
95.3450
19399431928152125
82.2368
qzeng-customSNPtvmap_l250_m2_e1*
78.0956
67.4211
92.7860
95.3708
19669501955152125
82.2368
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.2373
98.5618
88.4586
59.3016
1165171165152150
98.6842
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.2784
99.5607
95.0984
65.7462
294613294915210
6.5790
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
3.5385
1.9267
21.6495
84.1374
4120874215295
62.5000
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
7.2121
4.3609
20.8333
84.0266
296364015295
62.5000
asubramanian-gatkSNP*HG002compoundhethet
97.7049
96.5369
98.9015
46.6042
136874911368515223
15.1316
anovak-vgINDEL*lowcmp_SimpleRepeat_triTR_51to200*
26.7404
22.0721
33.9130
42.0655
4917378152131
86.1842
anovak-vgINDELD1_5map_l150_m2_e0het
81.1800
88.1323
75.2443
90.1933
4536146215257
37.5000
anovak-vgINDELI1_5map_l125_m0_e0*
57.2924
58.7097
55.9420
90.7507
18212819315298
64.4737
jlack-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.5616
97.8195
87.8400
82.6726
1301291098152125
82.2368