PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
851-900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.4542 | 96.4142 | 36.9777 | 47.8842 | 2635 | 98 | 2655 | 4525 | 4487 | 99.1602 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| mlin-fermikit | SNP | * | map_l100_m2_e1 | * | 72.9339 | 60.8681 | 90.9660 | 55.6863 | 45491 | 29246 | 45483 | 4517 | 3972 | 87.9345 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.3318 | 82.5652 | 72.7223 | 71.1326 | 13274 | 2803 | 12037 | 4515 | 1002 | 22.1927 | |
| anovak-vg | INDEL | D6_15 | * | het | 76.4820 | 81.7202 | 71.8750 | 45.3746 | 9473 | 2119 | 11523 | 4509 | 3518 | 78.0217 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 50.2642 | 88.4376 | 35.1094 | 44.6429 | 2417 | 316 | 2438 | 4506 | 4477 | 99.3564 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 77.9999 | 89.7911 | 68.9460 | 55.2115 | 9974 | 1134 | 10002 | 4505 | 4444 | 98.6459 | |
| ghariani-varprowl | SNP | * | * | homalt | 99.7891 | 99.9588 | 99.6200 | 19.7823 | 1179670 | 486 | 1179792 | 4500 | 2208 | 49.0667 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 78.8703 | 94.8102 | 67.5188 | 69.4075 | 9189 | 503 | 9350 | 4498 | 362 | 8.0480 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | * | 72.7370 | 60.6281 | 90.8897 | 55.5979 | 44843 | 29121 | 44835 | 4494 | 3956 | 88.0285 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 70.3371 | 62.5265 | 80.3777 | 56.0717 | 15344 | 9196 | 18388 | 4489 | 2592 | 57.7411 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.8320 | 33.8727 | 48.3358 | 55.3849 | 3412 | 6661 | 4197 | 4486 | 3438 | 76.6384 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.2884 | 84.6243 | 85.9630 | 70.3947 | 27073 | 4919 | 27454 | 4483 | 4096 | 91.3674 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.3685 | 84.7087 | 86.0387 | 70.3107 | 27100 | 4892 | 27621 | 4482 | 4002 | 89.2905 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.9780 | 97.7891 | 79.9560 | 49.1916 | 17781 | 402 | 17815 | 4466 | 191 | 4.2768 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 56.1720 | 50.7947 | 62.8225 | 45.1920 | 7510 | 7275 | 7523 | 4452 | 4009 | 90.0494 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 28.5443 | 93.7568 | 16.8348 | 81.4803 | 856 | 57 | 901 | 4451 | 48 | 1.0784 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 69.4728 | 78.5200 | 62.2951 | 44.9448 | 3491 | 955 | 7334 | 4439 | 3996 | 90.0203 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 61.1186 | 54.5495 | 69.4865 | 69.7213 | 8597 | 7163 | 10095 | 4433 | 1247 | 28.1299 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | * | 72.2095 | 59.9657 | 90.7360 | 51.7425 | 43417 | 28986 | 43409 | 4432 | 3924 | 88.5379 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 44.0541 | 41.4041 | 47.0666 | 44.8610 | 3916 | 5542 | 3939 | 4430 | 3649 | 82.3702 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 50.1218 | 86.1980 | 35.3337 | 81.4035 | 2342 | 375 | 2414 | 4418 | 249 | 5.6360 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | * | 93.7321 | 96.5489 | 91.0750 | 79.3697 | 45573 | 1629 | 44971 | 4407 | 338 | 7.6696 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.1882 | 84.7031 | 89.8235 | 87.4240 | 38711 | 6991 | 38837 | 4400 | 387 | 8.7955 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.1882 | 84.7031 | 89.8235 | 87.4240 | 38711 | 6991 | 38837 | 4400 | 387 | 8.7955 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.9935 | 92.8372 | 93.1502 | 44.3921 | 33971 | 2621 | 59822 | 4399 | 3170 | 72.0618 | |
| ltrigg-rtg2 | SNP | * | * | * | 99.8749 | 99.8935 | 99.8562 | 17.0058 | 3051374 | 3252 | 3051531 | 4395 | 283 | 6.4391 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | * | 2.8447 | 2.1650 | 4.1467 | 43.0029 | 190 | 8586 | 190 | 4392 | 4347 | 98.9754 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | * | 93.7014 | 96.5392 | 91.0256 | 79.3194 | 45106 | 1617 | 44517 | 4389 | 336 | 7.6555 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.0445 | 67.3110 | 57.5423 | 47.2192 | 3935 | 1911 | 5947 | 4388 | 3469 | 79.0565 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 62.0445 | 67.3110 | 57.5423 | 47.2192 | 3935 | 1911 | 5947 | 4388 | 3469 | 79.0565 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | het | 91.4989 | 96.9163 | 86.6551 | 82.4293 | 28726 | 914 | 28383 | 4371 | 310 | 7.0922 | |
| qzeng-custom | SNP | ti | * | * | 99.5194 | 99.2515 | 99.7887 | 20.8361 | 2069907 | 15611 | 2063126 | 4368 | 997 | 22.8251 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | * | 93.5846 | 96.5275 | 90.8158 | 77.9328 | 43753 | 1574 | 43182 | 4367 | 333 | 7.6254 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | het | 91.4436 | 96.8927 | 86.5748 | 82.3864 | 28407 | 911 | 28071 | 4353 | 308 | 7.0756 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | * | 2.5440 | 1.9257 | 3.7472 | 39.3654 | 169 | 8607 | 169 | 4341 | 4310 | 99.2859 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 57.8173 | 89.4447 | 42.7138 | 55.6700 | 3254 | 384 | 3236 | 4340 | 4025 | 92.7419 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | het | 91.2586 | 96.8794 | 86.2542 | 81.2481 | 27506 | 886 | 27183 | 4332 | 306 | 7.0637 | |
| mlin-fermikit | SNP | tv | * | homalt | 98.8702 | 98.8876 | 98.8528 | 20.1908 | 372928 | 4195 | 372923 | 4328 | 4101 | 94.7551 | |
| ltrigg-rtg1 | SNP | * | * | * | 99.8754 | 99.8921 | 99.8587 | 17.5113 | 3051330 | 3296 | 3051518 | 4317 | 267 | 6.1849 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 60.5878 | 57.3058 | 64.2686 | 55.8452 | 6581 | 4903 | 7763 | 4316 | 3401 | 78.7998 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | * | 79.6649 | 97.8931 | 67.1595 | 54.5136 | 8735 | 188 | 8812 | 4309 | 247 | 5.7322 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 66.0309 | 61.2472 | 71.6250 | 49.8874 | 10823 | 6848 | 10834 | 4292 | 4156 | 96.8313 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 66.0309 | 61.2472 | 71.6250 | 49.8874 | 10823 | 6848 | 10834 | 4292 | 4156 | 96.8313 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 54.3279 | 87.8989 | 39.3131 | 46.3121 | 2782 | 383 | 2770 | 4276 | 4018 | 93.9663 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | het | 54.0229 | 57.5810 | 50.8790 | 62.2806 | 995 | 733 | 4428 | 4275 | 2764 | 64.6550 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 52.8397 | 49.0718 | 57.2344 | 61.3327 | 4943 | 5130 | 5716 | 4271 | 3848 | 90.0960 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.7319 | 87.1393 | 88.3326 | 67.8909 | 31886 | 4706 | 32320 | 4269 | 3693 | 86.5074 | |