PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85801-85850 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 28.7500 | 0.0000 | 0.0000 | 184 | 456 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 12.5828 | 0.0000 | 0.0000 | 19 | 132 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 59.4937 | 0.0000 | 0.0000 | 141 | 96 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 21.2121 | 11.8644 | 100.0000 | 33.3333 | 7 | 52 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 15.3846 | 8.3333 | 100.0000 | 80.9524 | 1 | 11 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | homalt | 28.5714 | 16.6667 | 100.0000 | 86.4865 | 1 | 5 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 4 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 84.2105 | 4 | 11 | 9 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 4 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 83.8710 | 4 | 11 | 10 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 4 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | homalt | 42.1053 | 26.6667 | 100.0000 | 82.8125 | 4 | 11 | 11 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 96.2963 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 86.9565 | 2 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | homalt | 44.4444 | 28.5714 | 100.0000 | 88.0000 | 2 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | homalt | 54.5455 | 37.5000 | 100.0000 | 88.4615 | 3 | 5 | 6 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 29.1667 | 0.0000 | 0.0000 | 21 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | segdup | hetalt | 0.0000 | 28.8889 | 0.0000 | 0.0000 | 13 | 32 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | segdup | homalt | 43.3333 | 27.6596 | 100.0000 | 84.9206 | 13 | 34 | 19 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||