PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
85651-85700 / 86044 show all | |||||||||||||||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 94.7368 | 0 | 0 | 1 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 100.0000 | 94.7368 | 0 | 0 | 1 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 100.0000 | 91.6667 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 92.6829 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 93.0233 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | segdup | homalt | 0.0000 | 100.0000 | 0 | 19 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 4 | 1 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 2 | 1 | 0 | 0 | ||
gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I1_5 | * | hetalt | 0.0000 | 36.5106 | 0.0000 | 0.0000 | 4087 | 7107 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 41.9710 | 0.0000 | 0.0000 | 724 | 1001 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 36.5157 | 0.0000 | 0.0000 | 4081 | 7095 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 25.4181 | 0.0000 | 0.0000 | 228 | 669 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 58.8176 | 0.0000 | 0.0000 | 3492 | 2445 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 36.9048 | 0.0000 | 0.0000 | 31 | 53 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 |