PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85451-85500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 92.9440 | 0.0000 | 0.0000 | 382 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 62.1567 | 0.0000 | 0.0000 | 928 | 565 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 26.6154 | 0.0000 | 0.0000 | 173 | 477 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 76.6234 | 0.0000 | 0.0000 | 354 | 108 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 38.7755 | 0.0000 | 0.0000 | 19 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 78.5714 | 0.0000 | 0.0000 | 11 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 53.1915 | 0.0000 | 0.0000 | 25 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 52.0833 | 0.0000 | 0.0000 | 25 | 23 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 49.0196 | 0.0000 | 0.0000 | 25 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 69.2308 | 0.0000 | 0.0000 | 9 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 6 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7532 | 13 | 0 | 15 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 47.6190 | 0.0000 | 0.0000 | 40 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9955 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9947 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | homalt | 61.5385 | 44.4444 | 100.0000 | 50.0000 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | * | hetalt | 0.0000 | 50.2569 | 0.0000 | 0.0000 | 4108 | 4066 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 48.8648 | 0.0000 | 0.0000 | 495 | 518 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 50.3006 | 0.0000 | 0.0000 | 4100 | 4051 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | func_cds | homalt | 28.5714 | 16.6667 | 100.0000 | 50.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 23.3728 | 0.0000 | 0.0000 | 553 | 1813 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 56.7821 | 0.0000 | 0.0000 | 3868 | 2944 | 0 | 0 | 0 | ||