PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
8401-8450 / 86044 show all
rpoplin-dv42SNPtimap_l100_m2_e1*
99.4666
99.2947
99.6390
64.7230
4913634949129178121
67.9775
rpoplin-dv42SNPtvmap_siren*
99.5468
99.4818
99.6119
56.8797
456922384568617889
50.0000
raldana-dualsentieonINDELD1_5*homalt
99.7919
99.9448
99.6394
61.4897
488992748904177175
98.8701
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.3322
93.7096
94.9630
67.1681
33372243337177170
96.0452
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.2325
99.9052
94.6990
55.6809
316233162177175
98.8701
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.5878
99.1228
96.0996
69.2547
4407394361177169
95.4802
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.6166
92.7056
98.7164
31.4832
12760100413612177161
90.9605
asubramanian-gatkINDELD16_PLUS**
96.9778
96.5949
97.3637
71.3383
65532316537177130
73.4463
jpowers-varprowlSNPtvmap_l250_m2_e0*
94.2072
94.5177
93.8987
91.9751
2724158272417736
20.3390
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50*
96.6168
96.8493
96.3855
66.9947
47031534720177125
70.6215
qzeng-customINDELC16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
0.0000
2.2099
73.5766
0041770
0.0000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.4416
94.4303
96.4748
33.6724
48322854844177175
98.8701
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
97.2050
96.8677
97.5447
33.7225
70202277032177164
92.6554
qzeng-customSNPtvHG002compoundhet*
98.0856
98.0500
98.1212
53.9878
8749174924417764
36.1582
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
82.5563
97.7477
71.4516
75.1004
43410443177113
63.8418
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
85.4522
98.1108
75.6868
87.8606
7791555117716
9.0396
ciseli-customSNPtvlowcmp_SimpleRepeat_diTR_51to200het
11.7249
76.4706
6.3492
79.5676
134121772
1.1299
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1731
97.9516
98.3956
52.7295
1085522710855177173
97.7401
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
48.1662
32.3684
94.0862
61.2657
270656542816177163
92.0904
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
48.1662
32.3684
94.0862
61.2657
270656542816177163
92.0904
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.8906
94.5652
97.2537
40.0019
63513656268177104
58.7571
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.2421
98.0870
98.3978
52.9535
1087021210870177173
97.7401
jlack-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.8240
95.3174
83.1589
72.8494
91645874177168
94.9153
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.9473
99.3365
94.6703
50.0000
3144213144177175
98.8701
hfeng-pmm2INDELI1_5*homalt
99.7668
99.8262
99.7075
52.8322
6032310560327177174
98.3051
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.5816
99.2511
94.0520
47.6931
2783212783176175
99.4318
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.2064
95.5068
98.9676
53.3545
1687779416872176162
92.0455
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.2064
95.5068
98.9676
53.3545
1687779416872176162
92.0455
eyeh-varpipeINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
43.1125
69.4915
31.2500
41.9501
411880176164
93.1818
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
68.3650
71.1864
65.7588
23.2836
4217338176176
100.0000
jmaeng-gatkSNP*func_cds*
99.4513
99.8678
99.0382
31.9360
1812624181231761
0.5682
jmaeng-gatkSNP*func_cdshet
99.1816
99.9283
98.4461
36.9727
111538111501761
0.5682
rpoplin-dv42SNPtimap_l100_m2_e0*
99.4660
99.2933
99.6392
64.7198
4861534648608176120
68.1818
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
96.9036
99.8930
94.0880
54.4523
280132801176175
99.4318
anovak-vgINDEL*segduphet
72.6201
63.5061
84.7882
95.6374
93153598117691
51.7045
anovak-vgINDELC1_5HG002compoundhet*
24.7863
100.0000
14.1463
75.0305
102917615
8.5227
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
89.1469
90.2954
88.0272
87.4552
12841381294176110
62.5000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
87.0098
95.0798
80.2025
58.7471
71537713176170
96.5909
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
93.5778
96.7372
90.6183
55.9107
1601541700176163
92.6136
dgrover-gatkSNPtimap_l125_m2_e1*
99.3781
99.3327
99.4236
73.9461
303652043036117642
23.8636
egarrison-hhgaSNP*map_siren*
99.6583
99.4385
99.8791
53.8224
14540782114540817678
44.3182
ckim-isaacINDELD16_PLUSHG002complexvar*
76.1289
68.2288
86.0979
58.5597
1121522109017659
33.5227
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1499
97.8975
98.4036
52.7453
1084923310849176172
97.7273
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
62.9322
68.7879
57.9952
52.5481
227103243176130
73.8636
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
19.2870
17.7778
21.0762
81.7661
241114717645
25.5682
gduggal-snapfbSNPtvsegduphet
98.0225
99.3191
96.7593
93.1540
52513652551763
1.7046
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
11.1206
7.0388
26.4706
75.6646
5876663175113
64.5714
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
16.8844
12.6126
25.5319
75.5463
5638860175113
64.5714
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
43.8171
30.1266
80.3150
57.0116
7141656714175158
90.2857
anovak-vgINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
40.2391
29.5082
63.2353
29.4815
3686301175141
80.5714