PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84351-84400 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 25.2252 | 14.4330 | 100.0000 | 37.5000 | 14 | 83 | 15 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 10.0000 | 5.2632 | 100.0000 | 98.9583 | 1 | 18 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4954 | 8 | 16 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 16.2162 | 8.8235 | 100.0000 | 96.6480 | 6 | 62 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 47.6190 | 31.2500 | 100.0000 | 93.2692 | 20 | 44 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 16.2162 | 8.8235 | 100.0000 | 96.8750 | 6 | 62 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 93.5484 | 20 | 45 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 15.1899 | 8.2192 | 100.0000 | 96.9388 | 6 | 67 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 45.9770 | 29.8507 | 100.0000 | 93.6364 | 20 | 47 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0617 | 6 | 6 | 4 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.3333 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 52.1739 | 35.2941 | 100.0000 | 94.3662 | 12 | 22 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.5294 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | homalt | 53.0612 | 36.1111 | 100.0000 | 94.6309 | 13 | 23 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 18.1818 | 10.0000 | 100.0000 | 98.5507 | 2 | 18 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | homalt | 52.0000 | 35.1351 | 100.0000 | 94.7712 | 13 | 24 | 8 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | homalt | 72.7273 | 57.1429 | 100.0000 | 97.0149 | 4 | 3 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 55.5556 | 38.4615 | 100.0000 | 93.8053 | 10 | 16 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 56.4103 | 39.2857 | 100.0000 | 94.2149 | 11 | 17 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 55.0000 | 37.9310 | 100.0000 | 94.3089 | 11 | 18 | 7 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | * | 16.6667 | 100.0000 | 1 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | homalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | het | 16.6667 | 9.0909 | 100.0000 | 99.5495 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 60.0000 | 100.0000 | 3 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | * | 42.8571 | 27.2727 | 100.0000 | 99.7487 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | het | 35.2941 | 21.4286 | 100.0000 | 99.5902 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e0 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | * | 42.8571 | 27.2727 | 100.0000 | 99.7537 | 6 | 16 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | het | 35.2941 | 21.4286 | 100.0000 | 99.6016 | 3 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 3 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_siren | hetalt | 21.6216 | 12.1212 | 100.0000 | 96.0265 | 12 | 87 | 12 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | segdup | homalt | 71.7949 | 56.0000 | 100.0000 | 93.8416 | 28 | 22 | 21 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||