PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8301-8350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 56.6467 | 74.1379 | 45.8333 | 77.4799 | 86 | 30 | 154 | 182 | 4 | 2.1978 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 76.8250 | 72.2660 | 81.9980 | 90.9083 | 826 | 317 | 829 | 182 | 82 | 45.0549 | |
| ciseli-custom | SNP | ti | segdup | homalt | 98.5690 | 99.5470 | 97.6100 | 88.0096 | 7471 | 34 | 7433 | 182 | 99 | 54.3956 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.7626 | 87.4564 | 96.5147 | 48.4959 | 5013 | 719 | 5040 | 182 | 91 | 50.0000 | |
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | het | 99.4173 | 99.4423 | 99.3923 | 69.6868 | 29775 | 167 | 29768 | 182 | 38 | 20.8791 | |
| asubramanian-gatk | INDEL | D1_5 | * | homalt | 99.6476 | 99.6668 | 99.6283 | 62.3701 | 48763 | 163 | 48779 | 182 | 169 | 92.8571 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1969 | 98.0419 | 98.3525 | 52.6692 | 10865 | 217 | 10865 | 182 | 178 | 97.8022 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2980 | 99.6507 | 98.9479 | 58.0370 | 17117 | 60 | 17116 | 182 | 35 | 19.2308 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | * | 81.4439 | 74.1813 | 90.2830 | 92.9787 | 1563 | 544 | 1691 | 182 | 25 | 13.7363 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e1 | het | 89.8854 | 97.6190 | 83.2872 | 93.5910 | 902 | 22 | 902 | 181 | 52 | 28.7293 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 3.5430 | 9.8039 | 2.1622 | 93.6492 | 5 | 46 | 4 | 181 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.4599 | 40.5405 | 38.4354 | 56.0538 | 60 | 88 | 113 | 181 | 161 | 88.9503 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 69.4218 | 66.5306 | 72.5758 | 57.3368 | 489 | 246 | 479 | 181 | 180 | 99.4475 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.3412 | 95.1435 | 95.5397 | 38.5245 | 3879 | 198 | 3877 | 181 | 170 | 93.9227 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9032 | 98.0050 | 78.0606 | 68.7737 | 393 | 8 | 644 | 181 | 16 | 8.8398 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.8036 | 94.8601 | 96.7661 | 44.2918 | 5389 | 292 | 5416 | 181 | 176 | 97.2376 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.4462 | 95.8525 | 91.1578 | 42.6611 | 1872 | 81 | 1866 | 181 | 162 | 89.5028 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.5547 | 95.8398 | 93.3037 | 33.3744 | 622 | 27 | 2522 | 181 | 173 | 95.5801 | |
| ndellapenna-hhga | SNP | tv | HG002complexvar | * | 99.7569 | 99.5881 | 99.9262 | 21.8704 | 245138 | 1014 | 245164 | 181 | 131 | 72.3757 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | * | 98.4669 | 98.5887 | 98.3454 | 76.8340 | 10758 | 154 | 10758 | 181 | 38 | 20.9945 | |
| gduggal-bwaplat | INDEL | I6_15 | * | het | 84.1633 | 73.9659 | 97.6222 | 67.9845 | 7421 | 2612 | 7431 | 181 | 55 | 30.3867 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0884 | 99.7815 | 90.8168 | 71.4761 | 1827 | 4 | 1790 | 181 | 4 | 2.2099 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5518 | 100.0000 | 87.8849 | 70.8431 | 1387 | 0 | 1313 | 181 | 3 | 1.6575 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1901 | 87.5000 | 3.2086 | 48.1994 | 7 | 1 | 6 | 181 | 181 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 71.8588 | 77.9279 | 66.6667 | 60.8225 | 346 | 98 | 362 | 181 | 179 | 98.8950 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.6536 | 70.7724 | 91.0837 | 56.4003 | 2758 | 1139 | 1849 | 181 | 175 | 96.6851 | |
| hfeng-pmm3 | INDEL | D6_15 | * | * | 98.0738 | 96.8879 | 99.2891 | 51.0206 | 25280 | 812 | 25279 | 181 | 162 | 89.5028 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 32.8267 | 24.7508 | 48.7252 | 53.0585 | 149 | 453 | 172 | 181 | 136 | 75.1381 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | het | 98.8799 | 99.2158 | 98.5462 | 78.5485 | 12273 | 97 | 12269 | 181 | 29 | 16.0221 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5788 | 95.2991 | 95.8600 | 66.1112 | 4237 | 209 | 4191 | 181 | 178 | 98.3425 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.0806 | 99.8938 | 98.2806 | 45.8961 | 10346 | 11 | 10346 | 181 | 177 | 97.7901 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9622 | 97.8431 | 98.0816 | 45.4687 | 9254 | 204 | 9254 | 181 | 176 | 97.2376 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.9716 | 99.0079 | 96.9569 | 71.5543 | 5788 | 58 | 5735 | 180 | 166 | 92.2222 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.9716 | 99.0079 | 96.9569 | 71.5543 | 5788 | 58 | 5735 | 180 | 166 | 92.2222 | |
| ckim-isaac | INDEL | D1_5 | * | hetalt | 92.0397 | 86.6959 | 98.0855 | 45.9935 | 8882 | 1363 | 9222 | 180 | 168 | 93.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.7803 | 96.9198 | 92.7331 | 49.7056 | 2297 | 73 | 2297 | 180 | 49 | 27.2222 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.6109 | 85.8533 | 95.9267 | 79.8715 | 13236 | 2181 | 4239 | 180 | 178 | 98.8889 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | * | 97.9625 | 98.6126 | 97.3210 | 77.9914 | 6539 | 92 | 6539 | 180 | 17 | 9.4444 | |
| ckim-gatk | INDEL | * | map_siren | het | 97.5443 | 99.0018 | 96.1290 | 86.6172 | 4463 | 45 | 4470 | 180 | 15 | 8.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6494 | 97.0713 | 98.2344 | 36.6573 | 9181 | 277 | 10015 | 180 | 172 | 95.5556 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | * | 77.0822 | 63.5950 | 97.8298 | 88.5344 | 8116 | 4646 | 8114 | 180 | 23 | 12.7778 | |
| gduggal-snapvard | INDEL | D6_15 | * | homalt | 45.1606 | 30.1454 | 89.9777 | 38.5773 | 1907 | 4419 | 1616 | 180 | 176 | 97.7778 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.4085 | 98.5294 | 87.0036 | 79.8311 | 1206 | 18 | 1205 | 180 | 12 | 6.6667 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.0460 | 40.3746 | 86.4662 | 35.5308 | 388 | 573 | 1150 | 180 | 175 | 97.2222 | |
| jmaeng-gatk | INDEL | * | map_siren | het | 97.3536 | 98.6247 | 96.1148 | 86.8437 | 4446 | 62 | 4453 | 180 | 15 | 8.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 56.8558 | 74.1379 | 46.1078 | 77.3098 | 86 | 30 | 154 | 180 | 4 | 2.2222 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3797 | 98.5411 | 94.3110 | 80.2460 | 2972 | 44 | 2984 | 180 | 15 | 8.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.4044 | 84.5779 | 76.6234 | 63.7476 | 521 | 95 | 590 | 180 | 64 | 35.5556 | |