PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
80251-80300 / 86044 show all
ckim-isaacSNPtvmap_l100_m2_e0hetalt
72.7273
57.1429
100.0000
77.3585
24182400
ckim-isaacSNPtvmap_l100_m2_e1hetalt
73.5294
58.1395
100.0000
76.6355
25182500
ckim-isaacSNPtvmap_l125_m0_e0hetalt
61.5385
44.4444
100.0000
85.7143
45400
ckim-isaacSNPtvmap_l125_m0_e0homalt
60.6213
43.4939
100.0000
64.5894
966125596600
ckim-isaacSNPtvmap_l125_m1_e0hetalt
66.6667
50.0000
100.0000
78.5714
15151500
ckim-isaacSNPtvmap_l125_m2_e0hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNPtvmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
81.0127
15151500
ckim-isaacSNPtvmap_l150_m0_e0hetalt
0.0000
100.0000
03000
ckim-isaacSNPtvmap_l150_m0_e0homalt
57.8158
40.6627
100.0000
71.4889
54078854000
ckim-isaacSNPtvmap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
85.7143
812800
ckim-isaacSNPtvmap_l150_m2_e0hetalt
57.1429
40.0000
100.0000
87.0968
812800
ckim-isaacSNPtvmap_l150_m2_e1hetalt
57.1429
40.0000
100.0000
87.3016
812800
ckim-isaacSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacSNPtvmap_l250_m0_e0homalt
57.0370
39.8964
100.0000
90.1911
771167700
ckim-isaacSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
92.3077
22200
ckim-isaacSNPtvmap_l250_m1_e0homalt
52.7945
35.8645
100.0000
85.4226
30754930700
ckim-isaacSNPtvmap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNPtvmap_l250_m2_e0homalt
53.0196
36.0726
100.0000
87.3075
33859933800
ckim-isaacSNPtvmap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
93.7500
23200
ckim-isaacSNPtvmap_l250_m2_e1homalt
53.1056
36.1522
100.0000
87.3614
34260434200
ckim-isaacSNPtvmap_sirenhetalt
72.4409
56.7901
100.0000
72.4551
46354600
ckim-isaacSNPtvsegduphetalt
100.0000
100.0000
100.0000
93.8053
70700
ckim-isaacSNPtvsegdupwithalt*
0.0000
100.0000
00000
ckim-isaacSNPtvsegdupwithalthet
0.0000
100.0000
00000
ckim-isaacSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
ckim-isaacSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
ckim-isaacSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtvtech_badpromotershomalt
94.5946
89.7436
100.0000
25.5319
3543500
ckim-vqsrINDEL*decoy*
100.0000
100.0000
100.0000
99.9717
1001000
ckim-vqsrINDEL*decoyhet
100.0000
100.0000
100.0000
99.9801
60600
ckim-vqsrINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8485
10100
ckim-vqsrINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9337
30300
ckim-vqsrINDEL*func_cdshetalt
88.8889
80.0000
100.0000
50.0000
41400
ckim-vqsrINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4426
1201200
ckim-vqsrINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3846
30300
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
90.4918
82.6347
100.0000
64.3038
1382914100
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.5157
1001000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.5455
30300
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.5806
30300
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7273
20200
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8797
1601600
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9634
2102100
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
97.9592
96.0000
100.0000
26.9461
120512200
ckim-vqsrINDEL*map_l100_m0_e0hetalt
91.8033
84.8485
100.0000
91.3690
2852900