PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
79651-79700 / 86044 show all
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
98.0843
96.2406
100.0000
31.1996
128050127900
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
87.3563
77.5510
100.0000
20.0000
38114000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
96.0000
92.3077
100.0000
20.0000
1211200
ckim-isaacINDELD1_5map_l100_m0_e0homalt
74.7573
59.6899
100.0000
74.1176
15410415400
ckim-isaacINDELD1_5map_l125_m0_e0hetalt
80.0000
66.6667
100.0000
98.0000
21200
ckim-isaacINDELD1_5map_l125_m0_e0homalt
70.1754
54.0541
100.0000
79.5396
80688000
ckim-isaacINDELD1_5map_l150_m0_e0hetalt
50.0000
100.0000
11000
ckim-isaacINDELD1_5map_l150_m0_e0homalt
65.0794
48.2353
100.0000
84.9265
41444100
ckim-isaacINDELD1_5map_l150_m1_e0hetalt
72.7273
57.1429
100.0000
98.0892
43300
ckim-isaacINDELD1_5map_l150_m2_e0hetalt
72.7273
57.1429
100.0000
98.3696
43300
ckim-isaacINDELD1_5map_l150_m2_e1hetalt
76.9231
62.5000
100.0000
97.9058
53400
ckim-isaacINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5map_l250_m0_e0homalt
47.0588
30.7692
100.0000
97.2028
49400
ckim-isaacINDELD1_5map_l250_m1_e0hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5map_l250_m1_e0homalt
51.9481
35.0877
100.0000
93.7695
20372000
ckim-isaacINDELD1_5map_l250_m2_e0hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5map_l250_m2_e0homalt
53.6585
36.6667
100.0000
94.3005
22382200
ckim-isaacINDELD1_5map_l250_m2_e1hetalt
66.6667
100.0000
21000
ckim-isaacINDELD1_5map_l250_m2_e1homalt
53.6585
36.6667
100.0000
94.4584
22382200
ckim-isaacINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9921
10100
ckim-isaacINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9889
10100
ckim-isaacINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
ckim-isaacINDELD1_5tech_badpromoters*
94.4444
89.4737
100.0000
32.0000
1721700
ckim-isaacINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
41.6667
71700
ckim-isaacINDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
ckim-isaacINDELD1_5tech_badpromotershomalt
94.1176
88.8889
100.0000
27.2727
81800
ckim-isaacINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8742
10100
ckim-isaacINDELD6_15decoyhet
0.0000
100.0000
00000
ckim-isaacINDELD6_15decoyhetalt
100.0000
100.0000
100.0000
99.2063
10100
ckim-isaacINDELD6_15decoyhomalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15func_cdshetalt
66.6667
50.0000
100.0000
66.6667
11200
ckim-isaacINDELD6_15func_cdshomalt
95.6522
91.6667
100.0000
54.1667
1111100
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
95.9596
42400
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
80.0000
66.6667
100.0000
96.8750
21200
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ckim-isaacINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
85.7143
75.0000
100.0000
96.8421
31300
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
50.0000
100.0000
98.3871
11100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
75.0000
11100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
01000