PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
7801-7850 / 86044 show all
ltrigg-rtg2SNPtimap_siren*
99.4787
99.1669
99.7924
46.9044
995188369951320730
14.4928
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.7662
69.4733
90.9290
52.5276
20719102075207206
99.5169
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.8091
96.9639
87.1747
63.5912
51116140720789
42.9952
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
eyeh-varpipeINDEL*map_sirenhomalt
94.7726
96.1959
93.3908
81.3483
25541012925207162
78.2609
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
95.8927
93.7179
98.1709
38.9030
1112974611110207127
61.3527
dgrover-gatkSNP*map_l125_m0_e0het
98.7051
99.0287
98.3836
80.4812
125411231253820640
19.4175
hfeng-pmm2SNPtimap_l100_m2_e1het
99.3427
99.3508
99.3346
69.0698
307592013075220616
7.7670
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4496
99.8356
99.0666
73.6565
218633621863206205
99.5146
astatham-gatkSNPtv*het
99.2722
98.5893
99.9647
23.3815
583349834758328220635
16.9903
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
jmaeng-gatkSNP*map_l150_m0_e0het
75.3760
62.0529
95.9844
93.8640
49273013492420621
10.1942
gduggal-snapvardINDEL*map_l250_m2_e0*
77.7005
91.2387
67.6609
95.5856
3022943120649
23.7864
gduggal-snapvardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
0.0000
0.0000
9.2511
83.1727
002120616
7.7670
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
11.3424
10.7807
11.9658
93.0543
292402820615
7.2816
ghariani-varprowlSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
98.4008
99.8073
97.0334
44.7618
6732136738206131
63.5922
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
87.1624
85.4630
88.9307
63.9481
16522811655206205
99.5146
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.2828
75.9897
97.1657
76.5450
706422327062206204
99.0291
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.3194
97.8377
94.8474
67.7840
384685379220624
11.6505
gduggal-bwaplatSNP*segdup*
98.6033
97.9585
99.2566
93.9219
274945732750520620
9.7087
gduggal-bwaplatSNPtimap_l100_m1_e0*
83.2803
71.6572
99.4040
79.8206
34346135853435720664
31.0680
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
87.8267
81.6103
95.0682
57.7013
1363330723971206202
98.0583
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
87.8267
81.6103
95.0682
57.7013
1363330723971206202
98.0583
gduggal-bwafbSNPtvmap_l100_m0_e0*
98.4300
98.7008
98.1606
72.2063
109401441094020538
18.5366
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
85.5433
76.2190
97.4669
52.9093
789424637888205168
81.9512
eyeh-varpipeINDELD16_PLUSHG002complexvarhomalt
44.7304
49.8270
40.5797
45.3249
144145140205205
100.0000
gduggal-bwavardINDEL*map_l150_m1_e0het
88.6308
98.5965
80.4948
92.7959
8431284620544
21.4634
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
45.6233
95.4980
0117220516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
41.7614
95.5004
0114720516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
45.6233
95.4980
0117220516
7.8049
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
41.7614
95.5004
0114720516
7.8049
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5601
99.6979
99.4226
63.8015
353121073530120516
7.8049
jlack-gatkINDEL*map_l125_m2_e1*
94.6989
98.2022
91.4369
90.8050
218540218920514
6.8293
hfeng-pmm2SNPtimap_l100_m2_e0het
99.3370
99.3436
99.3305
69.0739
304212013041420516
7.8049
ckim-gatkSNP*HG002complexvarhet
99.7401
99.5255
99.9558
19.1024
463288220946316020569
33.6585
bgallagher-sentieonSNP*map_l150_m0_e0*
98.7085
99.1107
98.3096
80.7877
119251071192220530
14.6341
gduggal-snapfbSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
11.9658
93.3333
6.3927
89.8892
141142054
1.9512
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
71.3980
62.1268
83.9216
50.4662
185211291070205197
96.0976
gduggal-snapvardINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
63.6275
87.0968
50.1217
72.1733
548206205170
82.9268
raldana-dualsentieonSNPtimap_l100_m0_e0het
98.6534
98.7699
98.5371
69.8191
13811172138082052
0.9756
jmaeng-gatkINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.9102
91.2700
94.6103
54.6326
35863433581204197
96.5686
jpowers-varprowlSNPtvmap_l150_m0_e0het
93.9990
95.0405
92.9800
87.0071
2702141270220453
25.9804
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
54.4885
52.9412
56.1290
51.1555
261232261204201
98.5294
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.2853
97.2759
95.3147
68.9687
4178117415020419
9.3137
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
94.9992
97.3939
92.7195
74.6356
261670259820419
9.3137
egarrison-hhgaINDELD1_5HG002complexvarhomalt
98.5958
99.1036
98.0931
56.9237
105039510494204148
72.5490
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.0454
96.7804
99.3438
49.5652
30962103030885204187
91.6667
gduggal-snapvardINDEL*map_l250_m2_e1het
72.6943
94.7867
58.9537
96.0937
2001129320447
23.0392
ghariani-varprowlINDEL*map_l100_m0_e0het
89.7886
97.7473
83.0283
91.0144
9982399820461
29.9020
qzeng-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
58.1718
93.5484
42.2096
64.5582
5841492048
3.9216