PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77901-77950 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 95.0355 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3333 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.8113 | 16 | 0 | 16 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 73.7179 | 41 | 1 | 41 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 73.2484 | 42 | 1 | 42 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.5000 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 72.3810 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 77.1654 | 29 | 1 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3226 | 3 | 0 | 3 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 76.8293 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 80.8081 | 19 | 1 | 19 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 70.3008 | 79 | 2 | 79 | 0 | 0 | ||
| dgrover-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 51.9231 | 75 | 2 | 75 | 0 | 0 | ||
| dgrover-gatk | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 41.2361 | 580 | 2 | 580 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 35.9375 | 205 | 2 | 205 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.2372 | 577 | 2 | 577 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | func_cds | homalt | 99.9716 | 99.9431 | 100.0000 | 19.7443 | 5272 | 3 | 5272 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.4156 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||