PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77551-77600 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D6_15 | map_l125_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 93.4911 | 11 | 1 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.2459 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 96.9697 | 94.1176 | 100.0000 | 89.5765 | 32 | 2 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.0504 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.1429 | 94.4444 | 100.0000 | 89.6970 | 34 | 2 | 34 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.4126 | 18 | 2 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2222 | 94.5946 | 100.0000 | 89.6450 | 35 | 2 | 35 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 98.4127 | 96.8750 | 100.0000 | 95.1104 | 31 | 1 | 31 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.5056 | 20 | 0 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 5 | 0 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.6204 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 90.0000 | 24 | 2 | 24 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.0000 | 8 | 0 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 90.2622 | 26 | 2 | 26 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.2330 | 8 | 1 | 8 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 90.0369 | 27 | 2 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.5163 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6667 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 97.1429 | 94.4444 | 100.0000 | 97.1993 | 17 | 1 | 17 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.4057 | 11 | 0 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 96.9925 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 97.6744 | 95.4545 | 100.0000 | 97.0085 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.1253 | 14 | 0 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.6887 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 97.0833 | 21 | 1 | 21 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.2000 | 14 | 0 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4555 | 44 | 5 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 52.7778 | 17 | 0 | 17 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 54.5455 | 10 | 0 | 10 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.3949 | 98.7970 | 100.0000 | 64.8333 | 657 | 8 | 633 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 74.4186 | 11 | 1 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 9 | 0 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||