PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7651-7700 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4540 | 96.3472 | 98.5866 | 68.3439 | 15008 | 569 | 14997 | 215 | 126 | 58.6047 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2214 | 99.5485 | 98.8965 | 52.5869 | 11245 | 51 | 19268 | 215 | 45 | 20.9302 | |
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | * | 83.2162 | 85.2022 | 81.3206 | 87.0514 | 927 | 161 | 936 | 215 | 77 | 35.8140 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6937 | 90.7254 | 96.8627 | 52.3369 | 1976 | 202 | 6638 | 215 | 185 | 86.0465 | |
| hfeng-pmm3 | INDEL | I6_15 | HG002compoundhet | * | 95.0754 | 92.8327 | 97.4292 | 36.3885 | 8147 | 629 | 8148 | 215 | 212 | 98.6047 | |
| hfeng-pmm1 | INDEL | I1_5 | * | het | 99.6416 | 99.5559 | 99.7275 | 59.6258 | 78690 | 351 | 78673 | 215 | 113 | 52.5581 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.5587 | 94.3683 | 74.9709 | 75.2021 | 620 | 37 | 644 | 215 | 21 | 9.7674 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | het | 91.5991 | 98.9650 | 85.2538 | 88.9688 | 1243 | 13 | 1243 | 215 | 63 | 29.3023 | |
| gduggal-snapplat | SNP | * | segdup | * | 98.9750 | 98.7209 | 99.2304 | 93.4858 | 27708 | 359 | 27723 | 215 | 30 | 13.9535 | |
| ghariani-varprowl | SNP | * | map_siren | homalt | 99.5027 | 99.3944 | 99.6112 | 54.3239 | 54822 | 334 | 54823 | 214 | 127 | 59.3458 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.8322 | 99.5261 | 88.7546 | 70.2144 | 1680 | 8 | 1689 | 214 | 129 | 60.2804 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | het | 98.3399 | 98.4074 | 98.2724 | 78.0641 | 12173 | 197 | 12173 | 214 | 63 | 29.4393 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | * | 83.6206 | 72.1656 | 99.3982 | 81.0322 | 35333 | 13628 | 35344 | 214 | 67 | 31.3084 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.3834 | 97.8844 | 94.9277 | 48.0419 | 3979 | 86 | 4005 | 214 | 3 | 1.4019 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 52.4859 | 43.1507 | 66.9753 | 66.7692 | 378 | 498 | 434 | 214 | 200 | 93.4579 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0811 | 99.3345 | 98.8289 | 41.8039 | 18062 | 121 | 18059 | 214 | 2 | 0.9346 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8227 | 99.5014 | 98.1531 | 44.9941 | 11376 | 57 | 11373 | 214 | 2 | 0.9346 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.7219 | 95.2762 | 84.7795 | 79.3418 | 1190 | 59 | 1192 | 214 | 189 | 88.3178 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.7219 | 95.2762 | 84.7795 | 79.3418 | 1190 | 59 | 1192 | 214 | 189 | 88.3178 | |
| qzeng-custom | SNP | * | map_siren | homalt | 92.7642 | 86.8464 | 99.5474 | 49.2732 | 47901 | 7255 | 47073 | 214 | 193 | 90.1869 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.8714 | 98.8734 | 96.8895 | 83.9166 | 6582 | 75 | 6666 | 214 | 40 | 18.6916 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | het | 81.8738 | 72.6880 | 93.7170 | 91.2462 | 3199 | 1202 | 3192 | 214 | 178 | 83.1776 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6774 | 99.8805 | 97.5029 | 53.2435 | 8356 | 10 | 8356 | 214 | 211 | 98.5981 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | het | 99.1255 | 99.5859 | 98.6693 | 71.4407 | 15872 | 66 | 15868 | 214 | 25 | 11.6822 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002compoundhet | homalt | 72.9560 | 99.6564 | 57.5397 | 87.1560 | 290 | 1 | 290 | 214 | 213 | 99.5327 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | het | 99.1197 | 99.5817 | 98.6621 | 71.4019 | 15711 | 66 | 15707 | 213 | 25 | 11.7371 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5191 | 99.4821 | 99.5562 | 75.3624 | 48021 | 250 | 47785 | 213 | 116 | 54.4601 | |
| ckim-dragen | SNP | * | map_l250_m1_e0 | het | 96.2090 | 96.8454 | 95.5809 | 90.7991 | 4605 | 150 | 4607 | 213 | 14 | 6.5728 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | het | 96.2282 | 94.6262 | 97.8854 | 30.8078 | 810 | 46 | 9860 | 213 | 202 | 94.8357 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.6401 | 36.2653 | 95.9758 | 39.3144 | 3756 | 6601 | 5080 | 213 | 206 | 96.7136 | |
| ltrigg-rtg1 | SNP | ti | map_siren | het | 99.2961 | 98.9388 | 99.6561 | 47.8678 | 61719 | 662 | 61718 | 213 | 10 | 4.6948 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8529 | 96.2516 | 93.4942 | 76.5691 | 3030 | 118 | 3061 | 213 | 10 | 4.6948 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0590 | 97.3516 | 98.7767 | 53.3290 | 17203 | 468 | 17199 | 213 | 200 | 93.8967 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | * | 99.0308 | 99.0400 | 99.0217 | 66.4551 | 21562 | 209 | 21559 | 213 | 9 | 4.2254 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | het | 98.4666 | 98.6500 | 98.2839 | 76.4844 | 12203 | 167 | 12199 | 213 | 2 | 0.9390 | |
| raldana-dualsentieon | SNP | tv | map_siren | het | 99.3697 | 99.4827 | 99.2570 | 59.7589 | 28461 | 148 | 28456 | 213 | 2 | 0.9390 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | * | 84.8012 | 75.3988 | 96.8828 | 44.4562 | 6617 | 2159 | 6620 | 213 | 132 | 61.9718 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | het | 89.0053 | 98.5931 | 81.1170 | 93.2572 | 911 | 13 | 915 | 213 | 48 | 22.5352 | |
| eyeh-varpipe | SNP | ti | * | homalt | 99.9720 | 99.9710 | 99.9731 | 16.3629 | 802806 | 233 | 790297 | 213 | 89 | 41.7840 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 36.0728 | 82.2222 | 23.1047 | 89.1924 | 74 | 16 | 64 | 213 | 1 | 0.4695 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.7152 | 96.0167 | 97.4238 | 54.7331 | 8027 | 333 | 8055 | 213 | 202 | 94.8357 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.7152 | 96.0167 | 97.4238 | 54.7331 | 8027 | 333 | 8055 | 213 | 202 | 94.8357 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 71.1805 | 93.4426 | 57.4850 | 70.1252 | 114 | 8 | 288 | 213 | 154 | 72.3005 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1473 | 97.6302 | 98.6700 | 64.9578 | 15696 | 381 | 15802 | 213 | 56 | 26.2911 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5399 | 97.9550 | 97.1282 | 57.0303 | 7233 | 151 | 7204 | 213 | 194 | 91.0798 | |
| jli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3482 | 99.1423 | 99.5550 | 73.6647 | 47857 | 414 | 47648 | 213 | 149 | 69.9531 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | * | 66.5265 | 50.1758 | 98.6845 | 91.5836 | 15982 | 15870 | 15979 | 213 | 3 | 1.4085 | |