PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73301-73350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 462 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 1 | 13 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 2.0833 | 0.0000 | 0.0000 | 1 | 47 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 1 | 7 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.9188 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 92.3865 | 54 | 3 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.0905 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 1.1905 | 0.0000 | 0.0000 | 1 | 83 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdup | homalt | 95.4876 | 91.3649 | 100.0000 | 92.3834 | 328 | 31 | 325 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9948 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | homalt | 71.4286 | 55.5556 | 100.0000 | 40.0000 | 5 | 4 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | * | hetalt | 0.0000 | 0.2691 | 0.0000 | 0.0000 | 22 | 8152 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 2.1718 | 0.0000 | 0.0000 | 22 | 991 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 0.2576 | 0.0000 | 0.0000 | 21 | 8130 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0423 | 0.0000 | 0.0000 | 1 | 2365 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3230 | 0.0000 | 0.0000 | 22 | 6790 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2482 | 0.0000 | 0.0000 | 20 | 8039 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 39 | 0 | 0 | 0 | |||