PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71501-71550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 97.2875 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 92.0455 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 63.6364 | 46.6667 | 100.0000 | 95.1389 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.2754 | 2 | 6 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.5349 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m0_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 97.5610 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.5881 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.2368 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 96.7391 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | * | 68.4211 | 52.0000 | 100.0000 | 97.9066 | 13 | 12 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | het | 63.6364 | 46.6667 | 100.0000 | 98.4581 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 60.0000 | 42.8571 | 100.0000 | 97.1963 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | * | 71.4286 | 55.5556 | 100.0000 | 97.6744 | 15 | 12 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 98.2906 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.1613 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.5217 | 4 | 4 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | * | 44.4444 | 28.5714 | 100.0000 | 99.3750 | 2 | 5 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | het | 40.0000 | 25.0000 | 100.0000 | 99.5833 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.2143 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | * | 54.5455 | 37.5000 | 100.0000 | 99.1690 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | het | 57.1429 | 40.0000 | 100.0000 | 99.2701 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.3051 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | * | 54.5455 | 37.5000 | 100.0000 | 99.2063 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | het | 57.1429 | 40.0000 | 100.0000 | 99.3007 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.3871 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_siren | hetalt | 75.8621 | 61.1111 | 100.0000 | 87.2093 | 44 | 28 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | segdup | homalt | 90.6977 | 82.9787 | 100.0000 | 93.1860 | 39 | 8 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | * | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | het | 83.3333 | 71.4286 | 100.0000 | 70.5882 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 50.0000 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||