PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71401-71450 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.6783 | 6 | 18 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.6464 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | homalt | 20.0000 | 11.1111 | 100.0000 | 99.7067 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | * | 52.7778 | 35.8491 | 100.0000 | 98.9928 | 38 | 68 | 38 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | het | 62.0690 | 45.0000 | 100.0000 | 99.0193 | 27 | 33 | 27 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m1_e0 | homalt | 40.0000 | 25.0000 | 100.0000 | 98.6453 | 11 | 33 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | * | 55.1282 | 38.0531 | 100.0000 | 99.0247 | 43 | 70 | 43 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | het | 63.9175 | 46.9697 | 100.0000 | 99.0309 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 98.7487 | 12 | 33 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | * | 55.6962 | 38.5965 | 100.0000 | 99.0340 | 44 | 70 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | het | 63.9175 | 46.9697 | 100.0000 | 99.0657 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | homalt | 44.0678 | 28.2609 | 100.0000 | 98.6762 | 13 | 33 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_siren | hetalt | 74.1573 | 58.9286 | 100.0000 | 95.6405 | 66 | 46 | 65 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.9821 | 36 | 12 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | * | 87.1795 | 77.2727 | 100.0000 | 73.4375 | 17 | 5 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | homalt | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | het | 85.7143 | 75.0000 | 100.0000 | 48.5714 | 18 | 6 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.3922 | 67.2131 | 100.0000 | 65.8120 | 41 | 20 | 40 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.5522 | 47.6584 | 100.0000 | 63.8075 | 173 | 190 | 173 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 96.2500 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 84.1121 | 72.5806 | 100.0000 | 90.6832 | 45 | 17 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||