PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71351-71400 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 89.2265 | 39 | 21 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.8683 | 62.4277 | 100.0000 | 85.5414 | 216 | 130 | 215 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.9825 | 27.3743 | 100.0000 | 60.1626 | 49 | 130 | 49 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 78.0488 | 64.0000 | 100.0000 | 72.8814 | 16 | 9 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0513 | 69.5652 | 100.0000 | 20.0000 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.6301 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 64.4951 | 47.5962 | 100.0000 | 91.0163 | 99 | 109 | 99 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.4392 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.7611 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7018 | 25 | 20 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | * | 65.2174 | 48.3871 | 100.0000 | 96.3154 | 150 | 160 | 150 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | het | 67.1280 | 50.5208 | 100.0000 | 96.7944 | 97 | 95 | 97 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.5370 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 62.6506 | 45.6140 | 100.0000 | 93.7274 | 52 | 62 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 69.2308 | 52.9412 | 100.0000 | 98.0176 | 9 | 8 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.1452 | 51.6820 | 100.0000 | 91.3951 | 169 | 158 | 169 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 68.9655 | 52.6316 | 100.0000 | 98.0507 | 10 | 9 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | homalt | 69.0979 | 52.7859 | 100.0000 | 91.8846 | 180 | 161 | 180 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 68.9655 | 52.6316 | 100.0000 | 98.0843 | 10 | 9 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 69.0840 | 52.7697 | 100.0000 | 91.9982 | 181 | 162 | 181 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 55.9140 | 38.8060 | 100.0000 | 96.0606 | 26 | 41 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.8764 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 58.0645 | 40.9091 | 100.0000 | 94.7641 | 81 | 117 | 81 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 99.0196 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 57.9505 | 40.7960 | 100.0000 | 95.3803 | 82 | 119 | 82 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.8038 | 5 | 5 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.3168 | 85 | 119 | 85 | 0 | 0 | ||