PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1419 1420 1421 1422 1423 1424 1425 1426 1427 ... 1720 1721 » 71101-71150 / 86044 show all
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
eyeh-varpipe	INDEL	I6_15	map_l100_m0_e0	hetalt	66.6667	50.0000	100.0000	68.8889	2	2	14	0	0
eyeh-varpipe	INDEL	I6_15	map_l100_m1_e0	hetalt	62.5000	45.4545	100.0000	64.7059	10	12	30	0	0
eyeh-varpipe	INDEL	I6_15	map_l100_m2_e0	hetalt	62.5000	45.4545	100.0000	66.2921	10	12	30	0	0
eyeh-varpipe	INDEL	I6_15	map_l100_m2_e1	hetalt	62.5000	45.4545	100.0000	65.9341	10	12	31	0	0
eyeh-varpipe	INDEL	I6_15	map_l125_m0_e0	hetalt	0.0000	0.0000	100.0000	76.9231	0	0	6	0	0
eyeh-varpipe	INDEL	I6_15	map_l125_m1_e0	hetalt	76.9231	62.5000	100.0000	73.5849	5	3	14	0	0
eyeh-varpipe	INDEL	I6_15	map_l125_m2_e0	hetalt	76.9231	62.5000	100.0000	74.1379	5	3	15	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt	66.6667	50.0000	100.0000	96.0000	1	1	1	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	94.4444	2	0	2	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het	100.0000	100.0000	100.0000	95.2381	1	0	1	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	85.7143	1	0	1	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	89.5522	81.0811	100.0000	84.4156	60	14	60	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	20.0000	11.1111	100.0000	99.9586	1	8	1	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	80.0000	66.6667	100.0000	99.7509	4	2	5	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	88.8331	79.9097	100.0000	43.6306	354	89	354	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	87.2093	77.3196	100.0000	33.0357	75	22	75	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	95.0000	90.4762	100.0000	54.7619	19	2	19	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m0_e0	hetalt	68.9655	52.6316	100.0000	94.0828	10	9	10	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m0_e0	homalt	70.2703	54.1667	100.0000	92.8962	13	11	13	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m1_e0	hetalt	65.3465	48.5294	100.0000	89.8773	33	35	33	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m1_e0	homalt	80.3738	67.1875	100.0000	87.6081	43	21	43	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m2_e0	hetalt	65.3465	48.5294	100.0000	90.4348	33	35	33	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m2_e0	homalt	80.7339	67.6923	100.0000	88.0759	44	21	44	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m2_e1	hetalt	64.8148	47.9452	100.0000	90.3315	35	38	35	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m2_e1	homalt	80.3571	67.1642	100.0000	88.2199	45	22	45	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	*	59.7015	42.5532	100.0000	98.0806	20	27	20	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	het	58.5366	41.3793	100.0000	98.5419	12	17	12	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	hetalt	66.6667	50.0000	100.0000	96.8750	3	3	3	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m0_e0	homalt	58.8235	41.6667	100.0000	95.9350	5	7	5	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	*	77.4869	63.2479	100.0000	95.7544	74	43	74	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	het	78.0952	64.0625	100.0000	96.9675	41	23	41	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	hetalt	73.3333	57.8947	100.0000	93.6047	11	8	11	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	homalt	78.5714	64.7059	100.0000	89.9543	22	12	22	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m2_e0	*	77.6699	63.4921	100.0000	95.8506	80	46	80	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m2_e0	het	77.5862	63.3803	100.0000	96.9940	45	26	45	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m2_e0	hetalt	73.3333	57.8947	100.0000	94.3299	11	8	11	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m2_e0	homalt	80.0000	66.6667	100.0000	89.8734	24	12	24	0	0
gduggal-bwaplat	INDEL	D6_15	map_l125_m2_e1	*	77.5120	63.2812	100.0000	95.9008	81	47	81	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge