PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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7051-7100 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.8820 | 96.0769 | 82.6897 | 71.8992 | 1200 | 49 | 1199 | 251 | 105 | 41.8327 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3012 | 97.9926 | 98.6117 | 39.2636 | 17818 | 365 | 17829 | 251 | 187 | 74.5020 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | het | 98.9149 | 99.1251 | 98.7057 | 78.5477 | 19147 | 169 | 19141 | 251 | 23 | 9.1634 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 75.3208 | 65.0467 | 89.4493 | 64.1933 | 2088 | 1122 | 2128 | 251 | 224 | 89.2430 | |
| egarrison-hhga | INDEL | I1_5 | * | homalt | 99.4873 | 99.3910 | 99.5837 | 52.1988 | 60060 | 368 | 60044 | 251 | 188 | 74.9004 | |
| dgrover-gatk | SNP | * | map_l150_m2_e0 | het | 98.9689 | 99.1805 | 98.7582 | 81.1353 | 19968 | 165 | 19962 | 251 | 50 | 19.9203 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.5091 | 84.3949 | 82.6418 | 67.4764 | 1060 | 196 | 1195 | 251 | 203 | 80.8765 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | het | 98.7657 | 99.5031 | 98.0391 | 80.4407 | 12817 | 64 | 12549 | 251 | 11 | 4.3825 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.3446 | 96.7651 | 84.7231 | 88.8814 | 1376 | 46 | 1392 | 251 | 38 | 15.1394 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0038 | 68.1273 | 96.8955 | 89.4103 | 7836 | 3666 | 7834 | 251 | 9 | 3.5857 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | homalt | 69.5990 | 63.9968 | 76.2760 | 85.5956 | 807 | 454 | 807 | 251 | 203 | 80.8765 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.2286 | 59.3301 | 57.1672 | 32.0973 | 248 | 170 | 335 | 251 | 223 | 88.8446 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.7314 | 81.9672 | 56.2718 | 32.0710 | 100 | 22 | 323 | 251 | 223 | 88.8446 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.4940 | 97.3629 | 91.7893 | 91.5975 | 2806 | 76 | 2806 | 251 | 35 | 13.9442 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.9199 | 95.6831 | 98.1890 | 62.4288 | 13986 | 631 | 13609 | 251 | 218 | 86.8526 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | * | 96.2305 | 97.3642 | 95.1229 | 91.2925 | 4876 | 132 | 4876 | 250 | 52 | 20.8000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.6938 | 0.3506 | 33.1551 | 66.3366 | 4 | 1137 | 124 | 250 | 96 | 38.4000 | |
| ghariani-varprowl | INDEL | * | map_l125_m2_e1 | * | 91.8033 | 94.3820 | 89.3617 | 94.1271 | 2100 | 125 | 2100 | 250 | 82 | 32.8000 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.1136 | 83.0190 | 98.5341 | 67.6995 | 16769 | 3430 | 16804 | 250 | 110 | 44.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | * | 99.5494 | 99.2672 | 99.8332 | 56.8186 | 149560 | 1104 | 149606 | 250 | 187 | 74.8000 | |
| jli-custom | SNP | * | map_l100_m1_e0 | het | 99.2812 | 99.1159 | 99.4470 | 63.0672 | 44958 | 401 | 44955 | 250 | 62 | 24.8000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6853 | 98.9657 | 98.4065 | 63.1662 | 15597 | 163 | 15439 | 250 | 223 | 89.2000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1274 | 96.7822 | 93.5283 | 79.2155 | 3910 | 130 | 3613 | 250 | 209 | 83.6000 | |
| astatham-gatk | INDEL | D1_5 | * | het | 99.6974 | 99.6803 | 99.7145 | 58.9760 | 87294 | 280 | 87301 | 250 | 122 | 48.8000 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.2249 | 97.8914 | 96.5673 | 61.2235 | 6871 | 148 | 7033 | 250 | 97 | 38.8000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | het | 84.0437 | 74.9456 | 95.6560 | 90.8674 | 5507 | 1841 | 5505 | 250 | 9 | 3.6000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 47.6401 | 79.3548 | 34.0369 | 66.9573 | 123 | 32 | 129 | 250 | 2 | 0.8000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.5436 | 96.2382 | 98.8849 | 41.9802 | 21413 | 837 | 22170 | 250 | 228 | 91.2000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1399 | 97.6669 | 98.6176 | 47.8517 | 17833 | 426 | 17834 | 250 | 247 | 98.8000 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | * | 97.2818 | 97.6712 | 96.8956 | 89.8498 | 7801 | 186 | 7803 | 250 | 32 | 12.8000 | |
| dgrover-gatk | INDEL | I1_5 | * | homalt | 99.7224 | 99.8577 | 99.5874 | 55.4630 | 60342 | 86 | 60347 | 250 | 246 | 98.4000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | het | 98.2193 | 98.7871 | 97.6581 | 76.5519 | 10425 | 128 | 10425 | 250 | 45 | 18.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.8358 | 99.1988 | 98.4754 | 71.0733 | 16839 | 136 | 16083 | 249 | 72 | 28.9157 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.8358 | 99.1988 | 98.4754 | 71.0733 | 16839 | 136 | 16083 | 249 | 72 | 28.9157 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.4957 | 77.2826 | 98.2029 | 77.4578 | 13577 | 3991 | 13607 | 249 | 50 | 20.0803 | |
| jmaeng-gatk | SNP | tv | segdup | het | 97.3848 | 99.3758 | 95.4719 | 95.8451 | 5254 | 33 | 5250 | 249 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m2_e0 | * | 91.3432 | 89.7373 | 93.0076 | 85.5055 | 3314 | 379 | 3312 | 249 | 199 | 79.9197 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4242 | 99.5483 | 99.3004 | 56.7770 | 35259 | 160 | 35343 | 249 | 16 | 6.4257 | |
| ltrigg-rtg2 | INDEL | * | HG002complexvar | het | 99.0269 | 98.6108 | 99.4465 | 53.1360 | 45570 | 642 | 44739 | 249 | 116 | 46.5863 | |
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1812 | 99.7479 | 98.6208 | 60.0301 | 17806 | 45 | 17805 | 249 | 13 | 5.2209 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.2087 | 89.1575 | 93.3565 | 53.3541 | 3503 | 426 | 3499 | 249 | 235 | 94.3775 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 66.3114 | 62.9921 | 70.0000 | 83.0785 | 480 | 282 | 581 | 249 | 22 | 8.8353 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e1 | het | 93.1209 | 98.1679 | 88.5675 | 92.2930 | 1929 | 36 | 1929 | 249 | 34 | 13.6546 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | * | 94.5649 | 94.0898 | 95.0448 | 89.7593 | 4776 | 300 | 4776 | 249 | 130 | 52.2088 | |
| mlin-fermikit | SNP | * | map_l125_m2_e1 | het | 62.1228 | 45.4352 | 98.1839 | 65.4086 | 13467 | 16173 | 13462 | 249 | 8 | 3.2129 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | het | 83.5782 | 74.2554 | 95.5781 | 89.7806 | 5385 | 1867 | 5382 | 249 | 204 | 81.9277 | |
| dgrover-gatk | INDEL | * | HG002complexvar | * | 99.5612 | 99.4476 | 99.6751 | 58.4475 | 76513 | 425 | 76380 | 249 | 210 | 84.3373 | |