PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
70051-70100 / 86044 show all
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
53.2144
22493230700
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
58.3062
13821140800
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
94.2308
89.0909
100.0000
89.1403
98129600
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4517
96.9506
100.0000
80.4511
9222988400
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
70.0000
20300
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9324
97.8873
100.0000
78.7726
8341879900
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
30400
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.5123
99.0294
100.0000
77.4811
387738389600
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
0.0000
00100
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_51to200homalt
88.8889
80.0000
100.0000
93.1818
1231200
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
66.6667
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8931
99.7865
100.0000
53.0439
607513607800
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
72.2222
50500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200*
94.1176
88.8889
100.0000
95.5975
81700
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
95.6835
70600
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
95.0000
11100
ltrigg-rtg1SNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
63.6364
1601600
ltrigg-rtg1SNP*map_l100_m1_e0hetalt
100.0000
100.0000
100.0000
64.0351
4104100
ltrigg-rtg1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
ltrigg-rtg1SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
65.3226
4304300
ltrigg-rtg1SNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
71.8750
90900
ltrigg-rtg1SNP*map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
63.4146
3003000
ltrigg-rtg1SNP*map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
67.3913
3003000
ltrigg-rtg1SNP*map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
67.3913
3003000
ltrigg-rtg1SNP*map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
86.3636
30300
ltrigg-rtg1SNP*map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
68.7500
2002000
ltrigg-rtg1SNP*map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
70.5882
2002000
ltrigg-rtg1SNP*map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
71.0145
2002000
ltrigg-rtg1SNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
ltrigg-rtg1SNP*map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
85.1852
40400
ltrigg-rtg1SNP*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
83.3333
50500
ltrigg-rtg1SNP*map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
83.3333
50500
ltrigg-rtg1SNP*segduphetalt
100.0000
100.0000
100.0000
96.9027
70700
ltrigg-rtg1SNP*segdupwithalt*
0.0000
100.0000
00000