PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
69801-69850 / 86044 show all
jpowers-varprowlINDELD16_PLUSsegduphomalt
90.9091
83.3333
100.0000
93.6709
1021000
jpowers-varprowlINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
jpowers-varprowlINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
jpowers-varprowlINDELD16_PLUSsegdupwithalthetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
jpowers-varprowlINDELD16_PLUStech_badpromoters*
66.6667
50.0000
100.0000
50.0000
22200
jpowers-varprowlINDELD16_PLUStech_badpromotershet
66.6667
50.0000
100.0000
0.0000
22200
jpowers-varprowlINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD16_PLUStech_badpromotershomalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5*hetalt
0.0000
0.5076
0.0000
0.0000
5210193000
jpowers-varprowlINDELD1_5HG002complexvarhetalt
0.0000
1.9970
0.0000
0.0000
271325000
jpowers-varprowlINDELD1_5HG002compoundhethetalt
0.0000
0.4992
0.0000
0.0000
5110165000
jpowers-varprowlINDELD1_5decoy*
85.7143
75.0000
100.0000
99.9682
31300
jpowers-varprowlINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9748
20200
jpowers-varprowlINDELD1_5decoyhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9330
10100
jpowers-varprowlINDELD1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5func_cdshomalt
92.7536
86.4865
100.0000
23.8095
64106400
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2744
0.0000
0.0000
51817000
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7416
11100
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.5379
0.0000
0.0000
509246000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.4843
0.0000
0.0000
459246000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
1.4493
0.0000
0.0000
168000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
50.0000
100.0000
99.7319
11100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
1.3514
0.0000
0.0000
173000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
2.7027
0.0000
0.0000
136000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.2324
0.0000
0.0000
31288000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.6486
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.3333
10100
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.4818
0.0000
0.0000
398056000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.5273
0.0000
0.0000
366791000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.4772
0.0000
0.0000
398134000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.4843
0.0000
0.0000
459246000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.6099
0.0000
0.0000
426844000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0491000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.4866
0.0000
0.0000
2409000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.4689
0.0000
0.0000
71486000
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.1538
0.0000
0.0000
1649000