PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
69051-69100 / 86044 show all
jmaeng-gatkSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
04000
jmaeng-gatkSNPtvmap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvmap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
99.3243
14100
jmaeng-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
98.5685
70700
jmaeng-gatkSNPtvsegdupwithalt*
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthet
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
jmaeng-gatkSNPtvtech_badpromotershet
98.4615
96.9697
100.0000
47.5410
3213200
jmaeng-gatkSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL**hetalt
0.0000
0.7648
0.0000
0.0000
19325044000
jpowers-varprowlINDEL*HG002complexvarhetalt
0.0000
2.7305
0.0000
0.0000
1013598000
jpowers-varprowlINDEL*HG002compoundhethetalt
0.0000
0.7625
0.0000
0.0000
19224988000
jpowers-varprowlINDEL*decoyhetalt
0.0000
0.0000
0.0000
01000
jpowers-varprowlINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9173
30300
jpowers-varprowlINDEL*func_cdshetalt
0.0000
0.0000
0.0000
05000
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.6015
0.0000
0.0000
233801000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
33.3333
20.0000
100.0000
99.8894
14100
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
0.9081
0.0000
0.0000
14015277000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
1.7964
0.0000
0.0000
3164000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
03000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
40.0000
25.0000
100.0000
99.8862
13100
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
2.5751
0.0000
0.0000
6227000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
3.7879
0.0000
0.0000
5127000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.5876
0.0000
0.0000
162707000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.6030
0.0000
0.0000
8313681000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.6033
0.0000
0.0000
6711038000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.6271
0.0000
0.0000
8813944000
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.7543
0.0000
0.0000
12616579000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.8401
0.0000
0.0000
8810387000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0799
0.0000
0.0000
11251000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.7477
0.0000
0.0000
4531000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
016000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
1.3050
0.0000
0.0000
352647000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.5858
0.0000
0.0000
71188000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
1.0834
0.0000
0.0000
10913000
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
0125000