PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6851-6900 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | tv | map_l150_m2_e0 | het | 97.5182 | 98.6211 | 96.4396 | 82.0747 | 7152 | 100 | 7151 | 264 | 17 | 6.4394 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | homalt | 82.1383 | 80.2173 | 84.1537 | 87.5709 | 1403 | 346 | 1402 | 264 | 189 | 71.5909 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.6040 | 99.7536 | 95.5451 | 59.8944 | 5667 | 14 | 5662 | 264 | 263 | 99.6212 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.6036 | 99.2382 | 90.3825 | 74.1987 | 2475 | 19 | 2481 | 264 | 1 | 0.3788 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | * | 88.3530 | 84.1399 | 93.0103 | 89.4841 | 3512 | 662 | 3513 | 264 | 134 | 50.7576 | |
| raldana-dualsentieon | SNP | ti | map_l125_m1_e0 | het | 98.7264 | 98.8941 | 98.5593 | 72.2989 | 18064 | 202 | 18060 | 264 | 3 | 1.1364 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | homalt | 70.9467 | 99.0881 | 55.2542 | 86.1176 | 326 | 3 | 326 | 264 | 264 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| jli-custom | INDEL | D1_5 | * | * | 99.6468 | 99.4746 | 99.8195 | 58.9401 | 145974 | 771 | 146018 | 264 | 201 | 76.1364 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3994 | 95.4409 | 95.3578 | 49.7393 | 5422 | 259 | 5423 | 264 | 128 | 48.4848 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0581 | 99.5974 | 96.5657 | 46.5037 | 7422 | 30 | 7395 | 263 | 9 | 3.4221 | |
| jlack-gatk | INDEL | D1_5 | * | homalt | 99.6645 | 99.8651 | 99.4647 | 59.9060 | 48860 | 66 | 48867 | 263 | 260 | 98.8593 | |
| hfeng-pmm2 | SNP | ti | map_siren | het | 99.5502 | 99.5223 | 99.5781 | 56.1068 | 62084 | 298 | 62075 | 263 | 19 | 7.2243 | |
| ckim-vqsr | INDEL | * | HG002complexvar | * | 99.2578 | 98.8640 | 99.6548 | 58.2159 | 76064 | 874 | 75924 | 263 | 222 | 84.4106 | |
| dgrover-gatk | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5418 | 99.9350 | 99.1517 | 74.5652 | 30741 | 20 | 30741 | 263 | 257 | 97.7186 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | * | 95.9984 | 95.3950 | 96.6095 | 81.4997 | 7499 | 362 | 7494 | 263 | 77 | 29.2776 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7650 | 70.7957 | 96.7567 | 85.8314 | 7847 | 3237 | 7846 | 263 | 11 | 4.1825 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| jli-custom | SNP | * | map_l100_m2_e0 | het | 99.2823 | 99.1336 | 99.4314 | 64.8428 | 45997 | 402 | 45994 | 263 | 62 | 23.5741 | |
| jli-custom | SNP | ti | map_siren | * | 99.6599 | 99.5825 | 99.7375 | 51.1882 | 99936 | 419 | 99929 | 263 | 66 | 25.0951 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.3887 | 79.3103 | 58.5827 | 62.2024 | 368 | 96 | 372 | 263 | 261 | 99.2395 | |
| jpowers-varprowl | SNP | tv | segdup | het | 96.8798 | 98.6193 | 95.2007 | 93.8679 | 5214 | 73 | 5217 | 263 | 4 | 1.5209 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| bgallagher-sentieon | SNP | tv | map_siren | het | 99.3778 | 99.6714 | 99.0859 | 61.4179 | 28515 | 94 | 28510 | 263 | 27 | 10.2662 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| rpoplin-dv42 | INDEL | * | * | homalt | 99.5190 | 99.2498 | 99.7896 | 55.3247 | 124233 | 939 | 124240 | 262 | 239 | 91.2214 | |
| rpoplin-dv42 | INDEL | D16_PLUS | HG002compoundhet | het | 71.2910 | 94.8148 | 57.1195 | 50.0000 | 384 | 21 | 349 | 262 | 262 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.8622 | 99.1709 | 98.5554 | 65.0606 | 17703 | 148 | 17874 | 262 | 43 | 16.4122 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | het | 85.0006 | 76.5993 | 95.4718 | 87.4215 | 5532 | 1690 | 5524 | 262 | 216 | 82.4427 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | * | 99.1748 | 99.6284 | 98.7252 | 78.8203 | 20646 | 77 | 20291 | 262 | 16 | 6.1069 | |
| gduggal-snapplat | SNP | tv | map_l150_m0_e0 | het | 88.2289 | 86.2117 | 90.3428 | 90.9621 | 2451 | 392 | 2451 | 262 | 132 | 50.3817 | |
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | hetalt | 85.0180 | 77.5969 | 94.0087 | 72.7861 | 8673 | 2504 | 4111 | 262 | 204 | 77.8626 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2445 | 96.0604 | 98.4581 | 67.5236 | 17117 | 702 | 16730 | 262 | 221 | 84.3511 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | het | 95.1985 | 95.5072 | 94.8918 | 84.4938 | 4868 | 229 | 4867 | 262 | 76 | 29.0076 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | het | 97.5576 | 98.6846 | 96.4561 | 76.6502 | 7127 | 95 | 7131 | 262 | 21 | 8.0153 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.6852 | 99.1559 | 98.2189 | 80.5400 | 14448 | 123 | 14448 | 262 | 15 | 5.7252 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.6852 | 99.1559 | 98.2189 | 80.5400 | 14448 | 123 | 14448 | 262 | 15 | 5.7252 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | het | 84.7992 | 76.2808 | 95.4593 | 88.1483 | 5509 | 1713 | 5508 | 262 | 10 | 3.8168 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | * | 88.7551 | 83.8849 | 94.2257 | 93.7237 | 4258 | 818 | 4259 | 261 | 138 | 52.8736 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | * | 68.3069 | 62.1849 | 75.7660 | 65.1794 | 814 | 495 | 816 | 261 | 254 | 97.3180 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 90.6827 | 89.7196 | 91.6667 | 60.0255 | 2880 | 330 | 2871 | 261 | 260 | 99.6169 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 45.8313 | 30.1293 | 95.7115 | 55.2632 | 4147 | 9617 | 5825 | 261 | 249 | 95.4023 | |
| gduggal-bwavard | INDEL | * | segdup | het | 90.5367 | 97.4761 | 84.5196 | 96.2639 | 1429 | 37 | 1425 | 261 | 213 | 81.6092 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.6223 | 87.8582 | 95.7234 | 63.6163 | 7388 | 1021 | 5842 | 261 | 219 | 83.9080 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.4149 | 99.8046 | 95.1369 | 54.7737 | 5107 | 10 | 5106 | 261 | 260 | 99.6169 | |
| ciseli-custom | SNP | ti | func_cds | * | 98.7839 | 99.4488 | 98.1278 | 24.0438 | 13711 | 76 | 13680 | 261 | 31 | 11.8774 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 99.0767 | 99.4790 | 98.6777 | 68.4621 | 19477 | 102 | 19477 | 261 | 12 | 4.5977 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | * | 58.1032 | 59.3002 | 56.9536 | 86.9940 | 322 | 221 | 344 | 260 | 177 | 68.0769 | |