PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
68801-68850 / 86044 show all
jmaeng-gatkINDELI6_15segdupwithalt*
0.0000
100.0000
00000
jmaeng-gatkINDELI6_15segdupwithalthet
0.0000
100.0000
00000
jmaeng-gatkINDELI6_15segdupwithalthetalt
0.0000
100.0000
00000
jmaeng-gatkINDELI6_15segdupwithalthomalt
0.0000
100.0000
00000
jmaeng-gatkINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
56.6667
1301300
jmaeng-gatkINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
56.2500
70700
jmaeng-gatkINDELI6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
30300
jmaeng-gatkINDELI6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
62.5000
30300
jmaeng-gatkSNP*HG002compoundhethetalt
98.9449
97.9118
100.0000
22.9224
8441884400
jmaeng-gatkSNP*decoy*
0.0000
100.0000
00000
jmaeng-gatkSNP*decoyhet
0.0000
100.0000
00000
jmaeng-gatkSNP*decoyhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*decoyhomalt
0.0000
100.0000
00000
jmaeng-gatkSNP*func_cdshetalt
100.0000
100.0000
100.0000
64.2857
1001000
jmaeng-gatkSNP*func_cdshomalt
99.8852
99.7707
100.0000
21.6496
696316696300
jmaeng-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.1176
1501500
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.7478
16063160600
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9556
99.9112
100.0000
52.0358
22502225000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
57.4376
13821138200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.6744
95.4545
100.0000
91.0790
105510500
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.8776
30300
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.1176
1501500
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
93.6709
88.0952
100.0000
97.5610
3753700
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
92.0000
85.1852
100.0000
97.9860
2342300
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
96.5517
93.3333
100.0000
96.2466
1411400
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jmaeng-gatkSNP*lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000