PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1369 1370 1371 1372 1373 1374 1375 1376 1377 ... 1720 1721 » 68601-68650 / 86044 show all
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	60.0000	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	91.6667	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m0_e0	homalt	100.0000	100.0000	100.0000	98.5915	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m1_e0	hetalt	80.0000	66.6667	100.0000	93.7500	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	94.2857	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e1	hetalt	80.0000	66.6667	100.0000	94.4444	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	87.5000	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m0_e0	homalt	100.0000	100.0000	100.0000	98.4252	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m1_e0	hetalt	80.0000	66.6667	100.0000	91.3043	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m1_e0	homalt	100.0000	100.0000	100.0000	98.3333	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m2_e0	hetalt	80.0000	66.6667	100.0000	92.0000	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l125_m2_e1	hetalt	80.0000	66.6667	100.0000	92.0000	2	1	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	83.3333	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m0_e0	homalt	100.0000	100.0000	100.0000	99.0826	1	0	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m1_e0	hetalt	66.6667	50.0000	100.0000	94.1176	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m1_e0	homalt	100.0000	100.0000	100.0000	98.0645	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e0	hetalt	66.6667	50.0000	100.0000	94.4444	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e0	homalt	100.0000	100.0000	100.0000	98.2036	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e1	hetalt	66.6667	50.0000	100.0000	94.4444	1	1	1	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l150_m2_e1	homalt	100.0000	100.0000	100.0000	98.2036	3	0	3	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m0_e0	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m1_e0	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m1_e0	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m2_e0	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m2_e0	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m2_e1	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l250_m2_e1	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_siren	hetalt	96.7742	93.7500	100.0000	85.5856	15	1	16	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdup	hetalt	100.0000	100.0000	100.0000	97.2028	4	0	4	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	*	100.0000	100.0000	100.0000	71.4286	4	0	4	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	het	100.0000	100.0000	100.0000	71.4286	2	0	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	tech_badpromoters	homalt	100.0000	100.0000	100.0000	66.6667	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	decoy	*		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	decoy	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	decoy	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	func_cds	hetalt	100.0000	100.0000	100.0000	0.0000	2	0	2	0	0
jmaeng-gatk	INDEL	I1_5	func_cds	homalt	100.0000	100.0000	100.0000	31.2139	119	0	119	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*	100.0000	100.0000	100.0000	99.8605	1	0	1	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	96.2963	1	0	1	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6129	84.5238	100.0000	54.1935	71	13	71	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge