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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
6751-6800 / 86044 show all
ciseli-customSNPtimap_l250_m2_e1homalt
82.2049
80.4740
84.0118
87.5404
14263461424271196
72.3247
cchapple-customINDELD1_5HG002compoundhet*
96.3466
94.8427
97.8989
66.1292
1160463112627271261
96.3100
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5208
99.9187
99.1260
74.4622
307362530736271264
97.4170
raldana-dualsentieonSNPtimap_l125_m2_e0het
98.7385
98.9087
98.5689
73.7413
18670206186662713
1.1070
eyeh-varpipeSNPtimap_l100_m0_e0het
98.7795
99.5137
98.0561
74.4857
13915681367027110
3.6900
jlack-gatkINDELD16_PLUS**
96.2606
96.5065
96.0159
70.3319
65472376531271163
60.1476
jpowers-varprowlSNPtvmap_l125_m0_e0*
95.8974
95.8830
95.9119
81.8721
6358273635827170
25.8303
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2134
99.9065
98.5299
39.2599
1816617181632714
1.4760
jpowers-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
42.4175
33.3041
58.3975
75.7745
380761379270267
98.8889
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
88.5010
94.0928
83.5366
90.4222
133884137027090
33.3333
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
87.1597
96.2729
79.6226
85.7802
136953105527036
13.3333
gduggal-bwaplatSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.9355
77.6393
98.7607
75.1429
2148961892151727069
25.5556
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
83.1471
72.5516
97.3666
45.5005
998637789983270264
97.7778
ckim-dragenSNPtvmap_l150_m1_e0*
98.2065
98.8636
97.5581
77.3404
107881241078727027
10.0000
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1034
98.6295
99.5819
70.6519
6354888364304270244
90.3704
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.2933
90.4234
98.5092
63.1853
1770418751784127018
6.6667
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.2933
90.4234
98.5092
63.1853
1770418751784127018
6.6667
ckim-vqsrINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5126
99.8992
99.1290
74.4665
307303130730270263
97.4074
ckim-vqsrINDELD1_5*het
99.6940
99.6963
99.6917
60.8657
8730826687313270118
43.7037
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
89.3091
91.3606
87.3477
63.4839
17661671864270137
50.7407
jlack-gatkSNPtiHG002complexvarhet
99.8980
99.8818
99.9142
17.5660
31439437231434027088
32.5926
gduggal-snapvardINDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
55.2980
100.0000
38.2151
88.1796
1016727061
22.5926
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
86.7002
91.4894
82.3875
75.9605
12471161263270194
71.8519
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.4739
99.4515
93.6694
63.2423
398922399527019
7.0370
gduggal-snapplatINDELI6_15HG002compoundhethet
14.0448
16.8269
12.0521
71.7051
351733727038
14.0741
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
81.8508
71.2279
96.1979
32.2123
23329426806269258
95.9108
ckim-isaacSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.5751
94.0794
99.2069
56.5853
3332220973364726928
10.4089
dgrover-gatkINDELI6_15HG002compoundhethomalt
18.7311
100.0000
10.3333
64.1577
31031269268
99.6283
dgrover-gatkSNPtimap_sirenhet
99.5897
99.6105
99.5689
58.1271
621392436213026951
18.9591
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
71.8123
94.5170
57.9030
83.9608
3622137026972
26.7658
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8431
99.0551
98.6319
76.1009
193941851939426919
7.0632
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7888
99.9038
97.6985
41.2693
1142211114192692
0.7435
gduggal-bwavardINDELD1_5map_sirenhet
93.7475
98.8142
89.1751
86.6713
225027221626992
34.2007
gduggal-bwavardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
91.8096
96.1957
87.8060
82.7170
194777193726929
10.7807
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.2389
96.9229
97.5570
48.8051
1074134110742269266
98.8848
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1585
95.7079
98.6538
44.4898
1971288419713269264
98.1413
hfeng-pmm2INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2602
91.5616
97.1227
66.9273
92238509080269224
83.2714
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
70.2479
94.7075
55.8292
51.1236
34019340269269
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.0729
97.4752
98.6779
47.9442
2007652020077269262
97.3978
bgallagher-sentieonINDELI1_5*het
99.6628
99.6660
99.6596
60.0640
7877726478760269153
56.8773
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
98.6696
99.8938
97.4750
45.7112
103461110346268263
98.1343
gduggal-bwavardINDEL*map_l125_m2_e0het
90.4577
98.4184
83.6884
91.8376
136922137526870
26.1194
ckim-dragenSNPtvmap_l150_m2_e1het
97.5102
98.6119
96.4328
82.1323
7246102724526817
6.3433
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9631
97.2567
98.6798
47.9874
2003156520032268262
97.7612
gduggal-snapplatINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
57.7611
43.8153
84.7293
69.3664
159420441487268182
67.9104
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9357
97.2033
98.6791
48.0009
2002057620021268262
97.7612
jli-customSNP*map_l100_m1_e0*
99.4716
99.3149
99.6287
61.0483
719074967190426879
29.4776
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
11.5234
8.4648
18.0428
48.1775
5963859268265
98.8806
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2142
97.3128
99.1325
55.0694
3056484430624268105
39.1791