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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
6701-6750 / 86044 show all
bgallagher-sentieonSNPtimap_l100_m1_e0het
99.2799
99.4757
99.0849
68.0556
297851572977827538
13.8182
anovak-vgINDELI1_5map_l125_m1_e0homalt
68.2142
94.1896
53.4687
80.5464
30819316275253
92.0000
astatham-gatkINDELI6_15HG002compoundhethomalt
18.3976
100.0000
10.1307
62.6829
31031275274
99.6364
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
92.0621
91.0745
93.0713
64.3876
37043633694275266
96.7273
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2915
95.8966
98.7276
50.7699
2133791321338275268
97.4545
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
84.8964
75.6945
96.6451
41.6459
792925467922275269
97.8182
gduggal-bwavardINDEL*map_l125_m2_e0*
91.5832
95.0364
88.3721
90.1236
2087109209027574
26.9091
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
86.8762
81.9779
92.3970
60.2527
32667183342275210
76.3636
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
83.2953
72.7965
97.3327
63.5457
10035375010035275222
80.7273
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7839
96.9412
98.6414
47.7167
1996663019967275271
98.5455
jli-customINDEL*HG002compoundhethet
95.0677
97.0689
93.1473
77.2493
39741203738275245
89.0909
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0349
98.5054
99.5702
72.8907
6346896363480274249
90.8759
ckim-vqsrSNP*map_l125_m1_e0het
80.8165
68.4629
98.6098
88.4760
194388954194352743
1.0949
qzeng-customINDELI1_5HG002complexvar*
98.4325
97.7100
99.1658
52.3895
3259976432572274135
49.2701
ghariani-varprowlINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
47.0936
38.2121
61.3540
79.0423
436705435274265
96.7153
ghariani-varprowlINDELI6_15HG002compoundhethomalt
11.7284
61.2903
6.4846
55.1988
191219274248
90.5109
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8063
97.1411
98.4806
47.1994
1773752217759274239
87.2263
bgallagher-sentieonSNPtvmap_siren*
99.5565
99.7083
99.4051
58.5993
457961344578827436
13.1387
ckim-dragenSNPtvmap_l100_m0_e0*
98.2217
98.8903
97.5621
72.7546
109611231096527431
11.3139
ckim-gatkSNPtimap_l150_m1_e0het
84.9286
75.4406
97.1464
89.3093
93323038932827432
11.6788
ckim-gatkINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
ckim-dragenSNPtvsegdup*
98.3491
99.8476
96.8949
93.2025
85191385192736
2.1978
ciseli-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
74.3243
87.7660
64.4531
60.5344
49569495273223
81.6850
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
5.1744
2.8363
29.4574
72.6502
1013460114273176
64.4689
gduggal-snapvardINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
9.1482
5.4613
28.1579
72.1408
741281107273176
64.4689
ckim-vqsrINDELI6_15HG002compoundhethomalt
18.5075
100.0000
10.1974
63.1068
31031273272
99.6337
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
55.0999
88.5135
40.0000
49.5006
13117182273271
99.2674
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1945
93.5761
98.9636
58.8872
25900177826068273187
68.4982
jlack-gatkINDEL*map_l100_m1_e0*
95.3278
97.9922
92.8044
87.6441
351472352127326
9.5238
raldana-dualsentieonSNPtimap_l125_m1_e0*
99.1157
99.1614
99.0701
69.2148
290892462908527311
4.0293
qzeng-customINDELD1_5*homalt
99.2131
98.9883
99.4390
53.3870
4843149548391273239
87.5458
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
89.7651
91.4894
88.1046
61.3701
20211882022273186
68.1319
ltrigg-rtg1SNPtisegdup*
99.1266
99.6417
98.6169
87.5468
19467701946527331
11.3553
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.4831
99.6276
89.8438
81.7577
240892415273131
47.9853
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
82.9662
72.2705
97.3775
48.0824
10141389110137273266
97.4359
gduggal-bwafbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.8219
73.9368
91.5896
61.6810
392913852973273264
96.7033
gduggal-bwavardSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.8459
95.8744
91.9015
78.3452
3114134309827332
11.7216
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.1668
94.2029
79.3939
87.5000
104064104827243
15.8088
gduggal-bwavardINDEL*map_l125_m2_e1het
90.4455
98.4375
83.6538
91.9035
138622139227273
26.8382
gduggal-bwavardINDELD1_5map_siren*
93.7516
95.1544
92.3895
83.9860
3358171330227295
34.9265
rpoplin-dv42INDELD16_PLUSHG002compoundhet*
86.6377
85.3054
88.0123
33.8869
19973441997272272
100.0000
ciseli-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
85.3739
82.2047
88.7974
65.9324
21854732156272162
59.5588
gduggal-snapfbINDELI1_5HG002complexvarhetalt
73.7418
73.4647
74.0210
78.5933
1268458775272170
62.5000
jpowers-varprowlINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
31.2372
20.6053
64.5372
76.8976
4971915495272252
92.6471
bgallagher-sentieonSNP*map_l125_m0_e0het
98.5131
99.1551
97.8793
78.7667
125571071255427240
14.7059
anovak-vgSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
94.8271
96.9609
92.7851
60.5360
33501053498272223
81.9853
mlin-fermikitINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
85.2297
77.7913
94.2409
52.4466
445912734451272265
97.4265
mlin-fermikitSNPtimap_l250_m1_e0*
47.0199
32.5617
84.5718
76.5901
149130881491272230
84.5588
ndellapenna-hhgaSNP*HG002compoundhet*
98.3720
97.8158
98.9346
39.5539
2525856425258272233
85.6618
qzeng-customSNPtimap_l150_m0_e0het
73.7997
61.6049
92.0141
94.1071
314019573134272231
84.9265