PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
63851-63900 / 86044 show all | |||||||||||||||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.5278 | 5 | 0 | 5 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.5986 | 5 | 0 | 5 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | map_siren | hetalt | 80.7692 | 67.7419 | 100.0000 | 73.8095 | 21 | 10 | 22 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | segdup | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.4783 | 6 | 3 | 6 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 12 | 0 | 12 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9439 | 4 | 0 | 4 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7863 | 99.5736 | 100.0000 | 84.3551 | 467 | 2 | 467 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.3125 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.2280 | 15 | 0 | 15 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7731 | 99.5473 | 100.0000 | 61.8604 | 1759 | 8 | 1759 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.7586 | 70.5882 | 100.0000 | 97.2158 | 12 | 5 | 12 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9228 | 100.0000 | 59.5375 | 3884 | 3 | 3884 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 5 | 0 | 5 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 98.5915 | 97.2222 | 100.0000 | 88.5621 | 35 | 1 | 35 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9618 | 99.9237 | 100.0000 | 35.5315 | 1310 | 1 | 1310 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5507 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 |