PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
6201-6250 / 86044 show all
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4153
95.0558
97.8143
50.9442
1405473114052314309
98.4076
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50het
95.2061
98.4144
92.2003
46.1270
3600583700313294
93.9297
jmaeng-gatkINDELD1_5HG002compoundhet*
95.7461
94.1888
97.3557
66.4684
1152471111524313309
98.7220
jmaeng-gatkSNPtimap_l150_m2_e1het
85.3846
76.2889
96.9428
90.1640
99293086992531333
10.5431
ndellapenna-hhgaINDELI1_5HG002compoundhet*
95.9469
94.5452
97.3908
62.1995
1168267411683313258
82.4281
gduggal-bwaplatSNP*map_l100_m2_e0*
82.8217
70.9791
99.4075
82.3292
52499214655251131386
27.4760
gduggal-bwaplatSNP*map_l100_m2_e1het
86.6430
76.9436
99.1406
84.8541
36085108133610931383
26.5176
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
27.6434
24.0260
32.5431
70.1799
148468151313312
99.6805
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
ciseli-customINDEL*map_l150_m2_e1*
65.3436
59.0688
73.1100
93.1469
850589851313195
62.3003
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
80.2108
82.2072
78.3091
58.4509
10952371130313202
64.5367
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
68.1729
96.6574
52.6555
45.4921
34712347312311
99.6795
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.2633
93.9024
34.3158
41.8605
775163312287
91.9872
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
84.3287
99.4131
73.2189
85.2401
8475853312168
53.8462
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2310
94.8350
97.6687
49.0598
1307371213071312308
98.7179
rpoplin-dv42INDELD16_PLUS**
94.4399
93.5879
95.3076
64.2354
63494356337312290
92.9487
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
93.6836
92.7338
94.6530
63.9970
56414425523312296
94.8718
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
79.6846
71.7362
89.6138
68.4553
269810632692312233
74.6795
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
79.6846
71.7362
89.6138
68.4553
269810632692312233
74.6795
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
84.8725
80.8690
89.2931
75.5803
480211362602312198
63.4615
asubramanian-gatkINDELI6_15HG002compoundhethomalt
16.5775
100.0000
9.0379
62.9989
31031312304
97.4359
jpowers-varprowlSNPtvHG002complexvarhet
99.3313
98.8748
99.7919
23.6187
149035169614915531160
19.2926
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.8570
98.7533
98.9610
74.4420
3010038029622311194
62.3794
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.8570
98.7533
98.9610
74.4420
3010038029622311194
62.3794
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_51to200*
83.0581
82.1038
84.0349
57.1491
17253761637311307
98.7138
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
83.8527
73.6525
97.3325
72.7994
11355406211348311304
97.7492
ndellapenna-hhgaSNPtiHG002complexvar*
99.8069
99.6755
99.9387
17.4775
5067861650506808311223
71.7042
ndellapenna-hhgaINDELD16_PLUS*het
92.2712
93.4473
91.1244
67.5886
29522073193311263
84.5659
ltrigg-rtg2SNP*map_sirenhet
99.2163
98.7812
99.6552
46.0328
8988111098988731115
4.8232
gduggal-snapfbINDELD1_5*hetalt
84.1984
78.0771
91.3611
79.2100
799922463289311140
45.0161
ghariani-varprowlSNPtimap_l150_m0_e0het
96.0700
98.0773
94.1431
85.9691
499998499931179
25.4019
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
45.1741
82.9268
31.0421
68.1047
13628140311310
99.6785
gduggal-snapvardINDELD1_5map_l125_m2_e1*
88.0989
95.5920
81.6951
88.4146
1106511388311102
32.7974
dgrover-gatkSNP*map_l125_m2_e1*
99.3336
99.3263
99.3409
74.2508
468843184687831169
22.1865
dgrover-gatkSNP*map_l125_m2_e0*
99.3279
99.3194
99.3363
74.2156
464053184639931069
22.2581
gduggal-bwavardINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
33.0066
22.3881
62.7851
75.4350
5401872523310285
91.9355
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
48.9503
37.9479
68.9379
70.3682
6991143688310289
93.2258
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.1610
92.6630
77.0880
87.8937
1023811043310101
32.5806
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2241
98.9337
99.5161
74.5848
6374468763757310273
88.0645
raldana-dualsentieonSNP*map_l100_m0_e0*
99.0621
99.0682
99.0561
67.1734
325353063253131012
3.8710
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.5656
91.5183
93.6371
69.0667
45754244562310290
93.5484
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.5656
91.5183
93.6371
69.0667
45754244562310290
93.5484
ckim-dragenSNPtimap_l125_m0_e0het
97.4340
98.5598
96.3335
79.4732
8144119814531027
8.7097
hfeng-pmm1INDEL*HG002compoundhethet
86.5457
82.4866
91.0249
77.7276
33777173144310291
93.8710
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
59.0350
46.7546
80.0643
63.0729
131114931245310228
73.5484
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.5155
98.1227
98.9115
70.9579
281735392816931055
17.7419