PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5951-6000 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | het | 79.8036 | 68.1775 | 96.2100 | 91.1308 | 8634 | 4030 | 8631 | 340 | 27 | 7.9412 | |
| egarrison-hhga | INDEL | I1_5 | HG002compoundhet | * | 96.1134 | 95.0631 | 97.1871 | 62.4825 | 11746 | 610 | 11747 | 340 | 264 | 77.6471 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.5773 | 96.2462 | 96.9108 | 49.8130 | 10666 | 416 | 10666 | 340 | 299 | 87.9412 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.8403 | 94.5137 | 52.9086 | 74.2327 | 379 | 22 | 382 | 340 | 307 | 90.2941 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | * | 94.0016 | 91.1217 | 97.0695 | 64.7141 | 11259 | 1097 | 11262 | 340 | 339 | 99.7059 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | * | 99.4070 | 99.2740 | 99.5404 | 65.1757 | 73427 | 537 | 73416 | 339 | 198 | 58.4071 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.2599 | 99.8263 | 91.0930 | 68.6491 | 3449 | 6 | 3467 | 339 | 278 | 82.0059 | |
| ltrigg-rtg2 | INDEL | D1_5 | * | het | 99.5293 | 99.4473 | 99.6114 | 53.9225 | 87090 | 484 | 86889 | 339 | 71 | 20.9440 | |
| gduggal-snapfb | SNP | ti | map_l150_m0_e0 | * | 94.8381 | 94.0720 | 95.6168 | 81.0969 | 7395 | 466 | 7395 | 339 | 181 | 53.3923 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.3911 | 89.0476 | 62.4169 | 74.6344 | 561 | 69 | 563 | 339 | 45 | 13.2743 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.8048 | 89.3111 | 92.3494 | 45.1133 | 3267 | 391 | 4092 | 339 | 139 | 41.0029 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | het | 99.3701 | 99.4698 | 99.2707 | 71.6313 | 46153 | 246 | 46142 | 339 | 63 | 18.5841 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9150 | 98.5617 | 95.3224 | 87.1181 | 6784 | 99 | 6888 | 338 | 49 | 14.4970 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1456 | 99.7794 | 96.5643 | 55.8438 | 9500 | 21 | 9500 | 338 | 334 | 98.8166 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9724 | 98.3166 | 99.6370 | 70.9510 | 92859 | 1590 | 92766 | 338 | 265 | 78.4024 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 55.0977 | 41.6888 | 81.2222 | 64.9260 | 1570 | 2196 | 1462 | 338 | 247 | 73.0769 | |
| hfeng-pmm2 | SNP | * | map_l100_m1_e0 | het | 99.3136 | 99.3717 | 99.2555 | 68.4046 | 45074 | 285 | 45063 | 338 | 28 | 8.2840 | |
| ltrigg-rtg2 | SNP | * | map_siren | * | 99.4570 | 99.1479 | 99.7681 | 47.8411 | 144981 | 1246 | 144975 | 337 | 38 | 11.2760 | |
| astatham-gatk | INDEL | D6_15 | HG002compoundhet | * | 95.7191 | 95.2165 | 96.2270 | 36.2319 | 8599 | 432 | 8595 | 337 | 334 | 99.1098 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | het | 77.1850 | 70.0212 | 85.9817 | 41.0929 | 1649 | 706 | 2067 | 337 | 317 | 94.0653 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | * | 95.2970 | 93.9320 | 96.7022 | 31.4437 | 8483 | 548 | 9882 | 337 | 326 | 96.7359 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-snapfb | INDEL | * | map_siren | * | 93.6644 | 92.0513 | 95.3350 | 81.9963 | 6821 | 589 | 6887 | 337 | 103 | 30.5638 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| mlin-fermikit | INDEL | * | map_l100_m1_e0 | * | 74.7799 | 65.3095 | 87.4627 | 78.8610 | 2342 | 1244 | 2344 | 336 | 264 | 78.5714 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7673 | 98.4344 | 97.1092 | 52.3550 | 11254 | 179 | 11287 | 336 | 18 | 5.3571 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.8280 | 94.9712 | 98.7588 | 48.1636 | 26553 | 1406 | 26734 | 336 | 168 | 50.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.1504 | 99.7689 | 96.5836 | 55.8513 | 9499 | 22 | 9499 | 336 | 332 | 98.8095 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | * | 99.3983 | 99.2625 | 99.5346 | 63.1596 | 71869 | 534 | 71858 | 336 | 196 | 58.3333 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | * | 68.0279 | 62.5720 | 74.5262 | 89.7426 | 978 | 585 | 983 | 336 | 210 | 62.5000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2813 | 99.4514 | 97.1385 | 53.8661 | 11421 | 63 | 11406 | 336 | 321 | 95.5357 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.2695 | 94.2516 | 72.9904 | 73.0327 | 869 | 53 | 908 | 336 | 30 | 8.9286 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 91.4497 | 97.5621 | 86.0581 | 72.6726 | 2121 | 53 | 2074 | 336 | 8 | 2.3810 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.0162 | 97.8232 | 81.6639 | 77.4026 | 1483 | 33 | 1492 | 335 | 22 | 6.5672 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5257 | 98.5798 | 98.4716 | 73.3734 | 21588 | 311 | 21584 | 335 | 163 | 48.6567 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | het | 99.5106 | 99.4497 | 99.5716 | 56.0879 | 78606 | 435 | 77868 | 335 | 92 | 27.4627 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | * | 98.9484 | 98.9905 | 98.9063 | 73.9052 | 30300 | 309 | 30294 | 335 | 11 | 3.2836 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | het | 98.5424 | 98.7434 | 98.3423 | 77.9851 | 19880 | 253 | 19874 | 335 | 4 | 1.1940 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 63.6732 | 58.1871 | 70.3014 | 85.8912 | 796 | 572 | 793 | 335 | 286 | 85.3731 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 80.9979 | 73.8865 | 89.6241 | 43.4171 | 2903 | 1026 | 2885 | 334 | 316 | 94.6108 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.9909 | 40.9326 | 32.1138 | 96.9858 | 158 | 228 | 158 | 334 | 23 | 6.8862 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | * | 99.3819 | 99.4704 | 99.2936 | 73.5231 | 46952 | 250 | 46946 | 334 | 39 | 11.6766 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | het | 95.8224 | 96.2337 | 95.4146 | 78.9693 | 6950 | 272 | 6950 | 334 | 77 | 23.0539 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.0985 | 86.5550 | 85.6468 | 63.2965 | 1912 | 297 | 1993 | 334 | 189 | 56.5868 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | het | 83.3456 | 79.6421 | 87.4105 | 89.3842 | 1780 | 455 | 2319 | 334 | 53 | 15.8683 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.3516 | 67.9439 | 87.1341 | 64.1684 | 2181 | 1029 | 2262 | 334 | 260 | 77.8443 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.5217 | 98.2474 | 96.8067 | 41.4913 | 6615 | 118 | 10095 | 333 | 84 | 25.2252 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.0789 | 89.7382 | 86.4799 | 86.3258 | 2125 | 243 | 2130 | 333 | 219 | 65.7658 | |