PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt

« 1 2 ... 1191 1192 1193 1194 1195 1196 1197 1198 1199 ... 1720 1721 » 59701-59750 / 86044 show all
cchapple-custom	INDEL	C1_5	map_l250_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	map_l250_m2_e0	homalt	0.0000	0.0000	100.0000	97.2222	0	0	2	0	0
cchapple-custom	INDEL	C1_5	map_l250_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	map_l250_m2_e1	homalt	0.0000	0.0000	100.0000	97.3333	0	0	2	0	0
cchapple-custom	INDEL	C1_5	map_siren	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	map_siren	homalt	0.0000	0.0000	100.0000	94.5876	0	0	21	0	0
cchapple-custom	INDEL	C1_5	segdup	*	0.0000	0.0000	100.0000	99.0545	0	0	21	0	0
cchapple-custom	INDEL	C1_5	segdup	het	0.0000	0.0000	100.0000	99.3518	0	0	11	0	0
cchapple-custom	INDEL	C1_5	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	segdup	homalt	0.0000	0.0000	100.0000	98.0916	0	0	10	0	0
cchapple-custom	INDEL	C1_5	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	tech_badpromoters	*	0.0000	0.0000	100.0000	75.0000	0	0	1	0	0
cchapple-custom	INDEL	C1_5	tech_badpromoters	het		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C1_5	tech_badpromoters	homalt	0.0000	0.0000	100.0000	75.0000	0	0	1	0	0
cchapple-custom	INDEL	C6_15	*	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	HG002complexvar	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	HG002compoundhet	homalt	0.0000	0.0000	100.0000	97.2973	0	0	1	0	0
cchapple-custom	INDEL	C6_15	decoy	*		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	decoy	het		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	func_cds	*		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	func_cds	het		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	func_cds	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	func_cds	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	0.0000	0.0000	100.0000	97.8495	0	0	2	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	100.0000	95.5039	0	0	29	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	0.0000	0.0000	100.0000	95.2000	0	0	30	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	0.0000	0.0000	100.0000	89.0909	0	0	6	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	0.0000	0.0000	100.0000	92.9936	0	0	11	0	0
cchapple-custom	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	0.0000	0.0000	100.0000	95.3704	0	0	5	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge