PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5601-5650 / 86044 show all
hfeng-pmm2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9345
98.2816
99.5962
71.4015
92826162392734376307
81.6489
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.6216
88.8936
84.4628
86.9345
21052632044376124
32.9787
ckim-dragenSNPtvmap_l125_m2_e1*
98.4134
99.0575
97.7776
75.6170
165001571649937539
10.4000
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.6551
99.1981
98.1180
73.7453
194221571955137540
10.6667
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6551
99.1981
98.1180
73.7453
194221571955137540
10.6667
bgallagher-sentieonINDELD1_5HG002compoundhet*
95.8155
94.7855
96.8682
66.0428
1159763811599375373
99.4667
rpoplin-dv42INDELD6_15HG002compoundhethet
80.3742
96.7290
68.7500
68.2119
82828825375371
98.9333
qzeng-customSNP*map_l250_m2_e1het
76.4225
66.2804
90.2293
96.3549
348917753463375310
82.6667
qzeng-customSNP*map_l250_m2_e0het
76.2572
66.0955
90.1111
96.3398
343317613408374309
82.6203
ciseli-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.3846
71.4286
23.5174
34.4504
11546115374359
95.9893
gduggal-snapfbSNP*map_l250_m1_e0*
94.5000
94.2121
94.7896
89.4714
68044186804374175
46.7914
gduggal-snapfbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
69.0921
61.2589
79.2222
54.8419
9445971426374353
94.3850
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
52.6126
49.5308
56.1033
72.8835
475484478374353
94.3850
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.1844
90.2139
96.3573
74.4602
974410579893374179
47.8610
bgallagher-sentieonINDELI6_15*homalt
97.0258
99.8718
94.3376
54.5892
623186231374371
99.1979
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
92.4584
97.6813
87.7658
87.3735
265463268337417
4.5455
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3791
96.4809
98.2942
54.2906
2146778321493373326
87.3995
anovak-vgINDEL*map_l125_m2_e1het
70.9268
68.8210
73.1655
89.5197
9694391017373101
27.0777
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
53.2492
76.3251
40.8875
57.2493
21667258373323
86.5952
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.1882
12.9125
25.6972
75.4883
90607129373191
51.2064
gduggal-snapvardINDELC6_15HG002complexvar*
72.1017
100.0000
56.3743
72.3480
40482373150
40.2145
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
60.4335
56.1688
65.3989
55.6013
692540705373177
47.4531
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
ckim-dragenSNPtvmap_l125_m2_e0*
98.4063
99.0539
97.7671
75.5410
163331561633237339
10.4558
ciseli-customSNPtimap_l150_m0_e0homalt
84.9597
83.8464
86.1028
73.9645
23154462311373299
80.1609
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.2462
89.4980
77.8108
88.9364
13551591308373121
32.4397
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.8074
99.7089
94.0700
62.9542
616618591737314
3.7534
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.8947
98.7270
95.1293
53.9091
7290947285373354
94.9062
raldana-dualsentieonINDELD1_5**
99.4299
99.1168
99.7450
58.6151
1454491296145501372312
83.8710
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
49.3293
79.5367
35.7513
30.4087
20653207372357
95.9677
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
73.8072
96.5392
59.7403
70.7317
5301955237231
8.3333
jmaeng-gatkSNPtisegduphet
98.2022
99.4514
96.9839
94.5092
1196466119623722
0.5376
jmaeng-gatkSNPtvmap_l125_m1_e0*
83.4629
73.2830
96.9274
85.3732
1173742791173537213
3.4946
egarrison-hhgaSNP*HG002complexvar*
99.8252
99.7002
99.9506
18.9844
7521192262752170372223
59.9462
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1314
98.8438
97.4291
67.5197
1444816914060371345
92.9919
ciseli-customSNPtilowcmp_SimpleRepeat_quadTR_51to200*
26.8960
70.2970
16.6292
88.2926
71307437122
5.9299
ckim-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4089
99.5877
99.2308
76.0442
4807219947859371265
71.4286
gduggal-bwafbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.3470
98.2759
88.8889
80.5601
296452296837122
5.9299
gduggal-bwavardINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
43.5803
37.0727
52.8590
78.7470
423718416371276
74.3935
jmaeng-gatkSNPtvmap_l125_m1_e0het
87.4372
80.5254
95.6471
87.5400
81541972815237112
3.2345
ltrigg-rtg2INDEL*HG002complexvar*
98.9919
98.4780
99.5112
54.8986
75766117175523371227
61.1860
jpowers-varprowlSNP*map_l250_m2_e1het
93.5587
94.0919
93.0316
92.3350
4953311495337190
24.2588
jpowers-varprowlSNPtimap_l150_m1_e0het
96.3303
95.7074
96.9615
80.9022
1183953111839371130
35.0404
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
89.4089
97.4545
82.5903
53.4716
804211760371336
90.5660
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.4089
97.4545
82.5903
53.4716
804211760371336
90.5660