PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
55551-55600 / 86044 show all
asubramanian-gatkINDEL*map_l250_m2_e1hetalt
90.9091
83.3333
100.0000
97.9239
51600
asubramanian-gatkINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9985
10200
asubramanian-gatkINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9932
10200
asubramanian-gatkINDEL*segdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*segdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkINDEL*tech_badpromoters*
97.2973
94.7368
100.0000
69.0987
7247200
asubramanian-gatkINDEL*tech_badpromotershet
98.7013
97.4359
100.0000
53.6585
3813800
asubramanian-gatkINDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
asubramanian-gatkINDEL*tech_badpromotershomalt
95.2381
90.9091
100.0000
60.5263
3033000
asubramanian-gatkINDELC16_PLUSdecoy*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSdecoyhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSfunc_cds*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSfunc_cdshet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC16_PLUSmap_l100_m0_e0*
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSmap_l100_m0_e0het
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSmap_l100_m0_e0hetalt
0.0000
100.0000
00000