PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5451-5500 / 86044 show all
anovak-vgINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
39.5158
40.0000
39.0432
37.8119
132198253395347
87.8481
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1900
99.0255
97.3686
74.3160
144291421461639510
2.5317
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1900
99.0255
97.3686
74.3160
144291421461639510
2.5317
jpowers-varprowlSNPtimap_l150_m2_e1*
97.3682
96.6752
98.0713
80.1400
2003468920034394141
35.7868
gduggal-snapplatSNPtvmap_l125_m0_e0*
89.9339
86.5631
93.5778
86.2991
57408915741394208
52.7919
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.6752
99.5050
97.8590
48.2393
18093901800939421
5.3300
qzeng-customSNP*map_l250_m2_e0*
75.7461
64.0330
92.7037
95.4455
504928365006394328
83.2487
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
87.7736
89.0780
86.5068
60.4550
12561542526394302
76.6497
anovak-vgINDELI1_5map_l125_m1_e0*
59.3006
61.3253
57.4054
86.4983
509321531394267
67.7665
anovak-vgINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9699
22.4138
55.7303
40.4682
104360496394328
83.2487
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
ghariani-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
49.4821
41.3725
61.5460
81.3094
633897629393384
97.7099
gduggal-snapfbSNP*map_l250_m2_e1het
94.2221
95.7257
92.7651
87.6052
50392255039393175
44.5293
cchapple-customINDELD6_15**
97.8623
97.1869
98.5472
48.1960
2535873426658393348
88.5496
jlack-gatkSNPtvmap_l250_m1_e0*
91.7764
97.3933
86.7721
92.6439
257869257839324
6.1069
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
79.4418
90.8058
70.6058
71.2226
87989944393338
86.0051
hfeng-pmm1SNPti*het
99.9312
99.8931
99.9694
16.7684
12805211370128047039229
7.3980
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.7404
96.3511
97.1328
51.7215
1328250313280392385
98.2143
ckim-dragenINDELI1_5HG002compoundhethomalt
62.2015
99.0881
45.3278
87.8082
3263325392391
99.7449
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
64.0961
94.0104
48.6239
70.6199
3612337139215
3.8265
ndellapenna-hhgaINDELD6_15HG002complexvar*
88.9462
85.9864
92.1169
57.7872
45597434569391292
74.6803
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3343
99.9317
98.7440
74.3514
307402130740391384
98.2097
asubramanian-gatkINDELC1_5**
0.0000
80.0000
0.0000
77.6571
8203910
0.0000
gduggal-snapplatSNPtvmap_l125_m0_e0het
89.8264
88.7753
90.9027
88.4354
39074943907391205
52.4297
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.3228
88.0846
94.8081
46.5735
21662937140391343
87.7238
eyeh-varpipeSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.0949
95.8388
73.3424
87.1802
145163107339039
10.0000
gduggal-bwafbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.3543
98.5726
92.3394
77.6916
469668470139034
8.7180
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.2203
97.7012
98.7450
60.3971
3068672230686390372
95.3846
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.2203
97.7012
98.7450
60.3971
3068672230686390372
95.3846
qzeng-customSNPtvmap_sirenhet
91.9469
86.2561
98.4416
72.2639
24677393224636390264
67.6923
jpowers-varprowlSNPtimap_l150_m2_e0*
97.3631
96.6654
98.0710
80.0739
1982868419828390140
35.8974
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
88.9148
94.6211
83.8576
74.5711
20231152026390381
97.6923
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.3115
93.4534
63.0682
57.8947
57140666390384
98.4615
gduggal-snapplatINDELD6_15HG002complexvar*
44.3210
31.1015
77.0858
66.5750
164936531312390129
33.0769
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.1121
98.7732
95.5059
60.7561
82931038288390362
92.8205
rpoplin-dv42INDELD1_5HG002compoundhet*
95.7563
94.7855
96.7473
62.2778
1159763811600390380
97.4359
jpowers-varprowlSNPtvmap_l125_m1_e0het
96.3069
96.4448
96.1694
78.7859
9766360976638992
23.6504
jlack-gatkINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.9315
98.6064
93.3978
71.5802
5519785503389233
59.8972
gduggal-snapvardINDEL*segduphet
85.9532
91.8827
80.7426
95.9123
13471191631389289
74.2931
gduggal-snapplatSNP*HG002compoundhethomalt
94.8523
93.4799
96.2656
42.1750
1007970310002388273
70.3608
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
85.4858
93.1258
79.0043
75.2743
1436106146038846
11.8557
ltrigg-rtg1SNP*map_siren*
99.4858
99.2395
99.7333
50.0979
145115111214510838849
12.6289
qzeng-customSNPtvmap_l100_m2_e1*
88.3100
80.2832
98.1201
78.5916
20298498520251388306
78.8660
gduggal-bwafbSNP*map_l150_m1_e0het
98.1968
98.3951
97.9994
78.1832
190063101900638896
24.7423
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
89.3164
86.6966
92.0994
71.2589
44386814523388351
90.4639
hfeng-pmm2SNP*map_l100_m2_e1*
99.5245
99.5678
99.4812
67.6245
744143237440338847
12.1134
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.1230
32.4837
56.0227
78.9373
4971033493387383
98.9664
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3761
95.8604
98.9406
51.0374
36333156936144387350
90.4393
astatham-gatkINDELD6_15**
98.2985
98.0875
98.5103
54.9898
2559349925592387347
89.6641