PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5351-5400 / 86044 show all
jpowers-varprowlSNPtvmap_l125_m2_e0het
96.3204
96.5141
96.1274
80.0949
100783641007840694
23.1527
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.2627
95.4437
97.0959
63.8638
1395166613574406386
95.0739
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8172
98.5296
99.1064
71.0184
4503067245029406140
34.4828
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8172
98.5296
99.1064
71.0184
4503067245029406140
34.4828
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7709
99.7523
97.8086
67.6045
181214518121406388
95.5665
gduggal-bwafbSNP*map_l150_m1_e0*
98.6339
98.5952
98.6726
76.5153
3017943030179406107
26.3547
gduggal-snapvardINDELC1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
0.0000
0.0000
10.5727
87.5855
004840622
5.4187
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
83.6630
95.0637
74.7040
77.8987
1194621199406377
92.8571
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-dragenINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.6346
96.2423
97.0302
52.9948
1326751813265406403
99.2611
ckim-gatkSNPtimap_l125_m1_e0*
84.6397
74.3855
98.1731
83.5274
2182175142181740644
10.8374
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
97.6511
96.9845
98.3269
41.1237
2380074023802405370
91.3580
ciseli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
96.7305
99.3032
94.2877
46.8635
6698476685405129
31.8519
gduggal-bwafbSNP*map_l150_m2_e1het
98.2410
98.4629
98.0200
79.6828
200503132005040597
23.9506
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
75.3642
66.6334
86.7280
50.6405
935046822640404232
57.4257
bgallagher-sentieonSNP*map_l125_m2_e1het
99.0167
99.3893
98.6469
75.8815
294591812945340455
13.6139
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3320
98.9618
97.7101
71.4422
1763418517239404355
87.8713
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
94.1229
98.2424
90.3349
66.0632
3801683776404398
98.5149
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.0815
99.5612
98.6064
70.5927
285861262858640425
6.1881
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.0815
99.5612
98.6064
70.5927
285861262858640425
6.1881
mlin-fermikitINDELD6_15HG002complexvar*
90.8139
89.4568
92.2128
58.0463
47435594784404381
94.3069
mlin-fermikitSNPtimap_sirenhet
83.4382
72.0464
99.1091
46.3223
44944174384494440415
3.7129
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2564
99.6414
98.8744
60.9154
352921273548740450
12.3762
gduggal-snapfbSNP*map_l250_m2_e0*
94.6894
94.5212
94.8581
89.8978
74534327453404182
45.0495
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
67.0378
96.3964
51.3872
89.5473
4281642640327
6.6998
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
94.7282
99.1860
90.6540
71.0721
38993239094031
0.2481
bgallagher-sentieonSNP*map_l125_m2_e0het
99.0076
99.3826
98.6355
75.8378
291371812913140355
13.6476
ciseli-customSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
88.5602
98.1043
80.7085
72.3823
1656321686403136
33.7469
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.9278
99.0227
93.0204
76.6292
5370535371403345
85.6079
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.9278
99.0227
93.0204
76.6292
5370535371403345
85.6079
ndellapenna-hhgaINDELI6_15HG002compoundhet*
93.3379
91.5109
95.2392
35.4681
80317458042402334
83.0846
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
78.5716
74.3137
83.3471
67.6060
11373932012402245
60.9453
qzeng-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
78.5716
74.3137
83.3471
67.6060
11373932012402245
60.9453
gduggal-snapfbSNPtvlowcmp_SimpleRepeat_triTR_11to50*
94.3491
99.6812
89.5584
44.0081
34391134484024
0.9950
gduggal-snapplatSNP*map_l250_m1_e0*
87.2444
81.6810
93.6211
93.6506
589913235900402193
48.0100
gduggal-snapvardINDELD1_5map_l100_m1_e0het
87.4983
97.7667
79.1818
87.0966
1182271529402157
39.0547
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
97.8288
98.4539
97.2116
67.2453
1439122614015402380
94.5274
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.2176
99.5759
93.0785
81.7232
5400235406402172
42.7861
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.2176
99.5759
93.0785
81.7232
5400235406402172
42.7861
gduggal-bwafbSNP*map_l150_m2_e0het
98.2282
98.4453
98.0121
79.6044
198203131982040296
23.8806
ciseli-customSNP*map_l250_m0_e0het
62.5646
57.7025
68.3215
96.1752
86963786740213
3.2338
cchapple-customSNPtimap_l125_m0_e0*
96.3333
95.8549
96.8166
76.6174
1223352912226402120
29.8507
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
57.9234
60.5313
55.5310
45.5422
319208502402297
73.8806
anovak-vgINDELI1_5map_l125_m2_e0*
59.4733
61.3769
57.6842
87.5801
526331548402273
67.9104
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0121
98.4584
99.5720
70.6731
92993145693299401200
49.8753