PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53701-53750 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 29.6470 | 0.0000 | 0.0000 | 2024 | 4803 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 27.7254 | 0.0000 | 0.0000 | 2266 | 5907 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 28.3070 | 0.0000 | 0.0000 | 2630 | 6661 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 29.5818 | 0.0000 | 0.0000 | 2037 | 4849 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 6.5173 | 0.0000 | 0.0000 | 32 | 459 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 24.5742 | 0.0000 | 0.0000 | 101 | 310 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 36.0348 | 0.0000 | 0.0000 | 538 | 955 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1538 | 0.0000 | 0.0000 | 118 | 532 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 40.0433 | 0.0000 | 0.0000 | 185 | 277 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 20.4082 | 0.0000 | 0.0000 | 10 | 39 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 6 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 29.7872 | 0.0000 | 0.0000 | 14 | 33 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 31.2500 | 0.0000 | 0.0000 | 15 | 33 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 17 | 34 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 38.4615 | 0.0000 | 0.0000 | 5 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 5 | 10 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 3 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 3 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 37.5000 | 0.0000 | 0.0000 | 3 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 27 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdup | hetalt | 0.0000 | 17.3077 | 0.0000 | 0.0000 | 9 | 43 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9921 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | * | 88.2353 | 78.9474 | 100.0000 | 40.0000 | 15 | 4 | 15 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 22.2222 | 7 | 1 | 7 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 50.0000 | 8 | 1 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | * | hetalt | 0.0000 | 24.6269 | 0.0000 | 0.0000 | 2013 | 6161 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 25.8638 | 0.0000 | 0.0000 | 262 | 751 | 0 | 0 | 0 | ||