PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5151-5200 / 86044 show all
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1076
98.6776
99.5414
71.9967
93200124993118429358
83.4499
mlin-fermikitSNP*lowcmp_SimpleRepeat_diTR_11to50*
96.0726
96.5229
95.6265
68.5165
93553379380429282
65.7343
gduggal-bwaplatINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
87.9792
79.5523
98.4030
81.3702
26440679626434429144
33.5664
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.5224
99.6844
91.6941
50.1544
4738154736429428
99.7669
raldana-dualsentieonSNP*map_l125_m2_e1*
99.1573
99.2225
99.0922
71.3931
468353674682942915
3.4965
jpowers-varprowlSNP*map_l150_m0_e0het
94.6235
94.6474
94.5997
86.3683
75154257515429135
31.4685
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.2960
99.5274
99.0657
69.8134
454862164548642930
6.9930
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.2960
99.5274
99.0657
69.8134
454862164548642930
6.9930
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
20.1055
12.5225
50.9714
65.7132
4883409446429399
93.0070
ckim-dragenINDELI1_5HG002compoundhet*
94.8982
93.4283
96.4151
65.5477
1154481211538429425
99.0676
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
52.4550
86.9565
37.5546
88.1756
240362584297
1.6317
gduggal-snapvardINDELD1_5map_l100_m2_e1*
88.9679
94.1723
84.3087
85.8664
18261132305429173
40.3263
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.5538
96.1694
98.9788
57.8031
41675166041482428360
84.1121
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
egarrison-hhgaSNPtv**
99.8815
99.8074
99.9558
20.9138
9678221868967852428112
26.1682
bgallagher-sentieonSNPtimap_sirenhet
99.4766
99.6377
99.3160
56.6817
621562266214742850
11.6822
anovak-vgSNPtvlowcmp_SimpleRepeat_diTR_11to50*
93.6443
95.4077
91.9449
64.3247
46332234874427230
53.8642
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
76.6125
83.7838
70.5720
29.6655
5891141024427379
88.7588
gduggal-snapplatSNP*map_l250_m2_e1het
87.7421
84.4985
91.2446
94.9087
44488164450427204
47.7752
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
60.0572
82.6840
47.1535
44.1989
38280381427422
98.8290
qzeng-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50het
92.4707
95.9016
89.2767
52.5444
468203555427343
80.3279
qzeng-customINDEL*map_l100_m1_e0*
83.9800
79.0296
89.5920
87.4621
2834752366742666
15.4930
gduggal-snapplatSNP*map_l250_m2_e0*
87.8865
82.6252
93.8634
93.9104
651513706516426206
48.3568
ghariani-varprowlINDEL*map_l100_m2_e0het
90.5891
98.0928
84.1518
89.9495
2263442262426198
46.4789
ghariani-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
38.2525
82.8402
24.8677
55.3895
14029141426425
99.7653
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
78.1683
81.1429
75.4042
51.8889
8521981306426326
76.5258
gduggal-snapfbSNPtvmap_l150_m1_e0het
95.6989
97.3798
94.0751
75.4297
67641826764426173
40.6103
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.0265
98.4792
97.5780
71.1859
1754827117163426391
91.7840
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
86.6995
85.5368
87.8943
72.5250
30995243093426415
97.4178
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
ckim-vqsrINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.7235
93.8350
95.6289
69.0222
94526219298425390
91.7647
gduggal-snapfbSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
88.4727
98.6270
80.2142
81.5986
172424172342522
5.1765
gduggal-snapfbSNPtvmap_l100_m0_e0het
95.8604
97.4661
94.3068
70.6611
70391837040425163
38.3529
gduggal-bwafbSNPtimap_l100_m2_e1het
98.8201
99.0084
98.6326
70.6269
306533073065542595
22.3529
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
74.6828
72.3465
77.1751
57.2642
15205811437425403
94.8235
anovak-vgINDEL*map_l150_m1_e0*
72.5622
74.5142
70.7099
89.9578
9973411026425224
52.7059
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
91.7774
93.1267
90.4666
45.7994
691514033425374
88.0000
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
79.2418
93.0939
68.9781
57.8721
33725945425175
41.1765
jpowers-varprowlSNPtvmap_l125_m1_e0*
97.1666
96.9968
97.3371
76.5818
1553548115535425117
27.5294
ciseli-customSNP*map_l250_m2_e1homalt
81.0638
78.8447
83.4114
87.8871
21435752137425307
72.2353
ckim-isaacINDEL*HG002complexvarhomalt
93.1685
88.5818
98.2561
47.1228
23941308623890424132
31.1321
bgallagher-sentieonINDELI6_15HG002compoundhet*
93.1478
91.3856
94.9793
37.0668
80207568021424422
99.5283
bgallagher-sentieonSNP*map_l125_m2_e1*
99.2798
99.4555
99.1048
72.9953
469452574693942470
16.5094
bgallagher-sentieonSNP*map_l125_m2_e0*
99.2735
99.4499
99.0978
72.9518
464662574646042370
16.5485
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
88.7047
91.7202
85.8812
83.6926
24262192573423179
42.3168
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200het
33.7717
31.2245
36.7713
63.1405
153337246423326
77.0686
gduggal-bwafbSNP*map_l150_m2_e1*
98.6663
98.6464
98.6862
78.1729
3177443631774423108
25.5319
gduggal-bwavardINDELI16_PLUSHG002complexvar*
64.0905
62.4141
65.8596
60.8283
817492816423292
69.0307
gduggal-snapplatINDELD6_15*homalt
55.1666
41.1476
83.6743
63.6351
260337232168423248
58.6288