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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
49151-49200 / 86044 show all
jlack-gatkINDELD1_5map_sirenhomalt
99.3983
98.9726
99.8277
79.2900
115612115922
100.0000
jlack-gatkINDELD1_5segduphomalt
99.5828
99.7214
99.4444
94.1766
358135822
100.0000
jlack-gatkINDELD1_5tech_badpromoters*
95.0000
100.0000
90.4762
48.7805
1901920
0.0000
jlack-gatkINDELD1_5tech_badpromotershet
88.8889
100.0000
80.0000
56.5217
80820
0.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7333
100.0000
99.4681
59.3074
374037421
50.0000
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
96.0289
93.6620
98.5185
45.3441
133913322
100.0000
jlack-gatkINDELD6_15map_l100_m2_e1homalt
97.7778
98.5075
97.0588
85.2495
6616622
100.0000
jlack-gatkINDELD6_15map_l250_m0_e0*
85.7143
100.0000
75.0000
97.9487
60620
0.0000
jlack-gatkINDELD6_15map_l250_m0_e0het
80.0000
100.0000
66.6667
97.9730
40420
0.0000
jlack-gatkINDELI16_PLUSHG002complexvarhetalt
94.5436
90.1493
99.3884
68.8275
3023332521
50.0000
jlack-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.5974
93.6842
97.5904
90.6846
8968120
0.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.5817
91.8058
99.6815
70.4887
6055462621
50.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.1351
95.4545
96.8254
89.0815
6336120
0.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.0000
100.0000
92.3077
91.4191
2402422
100.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
97.2222
100.0000
94.5946
84.2553
3503522
100.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.9867
89.1496
99.3789
58.6118
3043732021
50.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.7137
90.5594
99.2674
55.9677
2592727121
50.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.1959
89.4737
99.4444
63.3401
3404035821
50.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.5817
91.8058
99.6815
70.4887
6055462621
50.0000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.7739
90.6810
99.2537
66.3317
2532626621
50.0000
jlack-gatkINDELI16_PLUSmap_l100_m1_e0*
92.3077
92.3077
92.3077
96.1194
2422420
0.0000
jlack-gatkINDELI16_PLUSmap_l100_m2_e0het
94.7368
100.0000
90.0000
95.6710
1801821
50.0000
jlack-gatkINDELI16_PLUSmap_l100_m2_e1het
94.7368
100.0000
90.0000
95.6803
1801821
50.0000
jlack-gatkINDELI16_PLUSmap_sirenhomalt
90.4762
90.4762
90.4762
95.1276
1921921
50.0000
jlack-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.1544
80.6020
99.7372
41.6858
72317475922
100.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8061
99.8706
99.7416
78.4940
772177220
0.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.7331
478047822
100.0000
jlack-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.4703
953295321
50.0000
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.4204
95.5696
99.3443
73.5702
3021430322
100.0000
jlack-gatkINDELI1_5map_l150_m0_e0homalt
98.5294
100.0000
97.1014
88.8889
6706722
100.0000
jlack-gatkINDELI1_5segduphomalt
99.4709
99.3658
99.5763
92.8690
470347022
100.0000
jlack-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
90.9909
83.7736
99.5690
47.3923
4448646221
50.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
98.5464
97.9339
99.1667
69.3878
237523822
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5507
100.0000
97.1429
69.2982
6806822
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
90.5668
83.1956
99.3711
46.1017
3026131621
50.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.2126
92.7854
99.9028
33.4520
2032158205522
100.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
96.1648
92.7160
99.8800
39.9063
1642129166522
100.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200het
0.0000
77.7778
0.0000
96.4286
72020
0.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
76.9417
63.8554
96.7742
29.5455
53306021
50.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4012
99.2823
99.5204
47.6788
415341521
50.0000
jlack-gatkINDELI6_15map_l100_m1_e0homalt
97.0588
100.0000
94.2857
87.3646
3303320
0.0000
jlack-gatkINDELI6_15map_l100_m2_e0homalt
97.0588
100.0000
94.2857
88.4868
3303320
0.0000
jlack-gatkINDELI6_15map_l100_m2_e1homalt
97.0588
100.0000
94.2857
88.7097
3303320
0.0000
jlack-gatkINDELI6_15map_l125_m0_e0*
82.7586
80.0000
85.7143
96.2466
1231220
0.0000
jlack-gatkINDELI6_15map_l125_m0_e0het
70.5882
66.6667
75.0000
96.9582
63620
0.0000
jlack-gatkINDELI6_15map_l125_m1_e0homalt
93.7500
100.0000
88.2353
91.1458
1501520
0.0000
jlack-gatkINDELI6_15map_l125_m2_e0homalt
93.7500
100.0000
88.2353
92.2374
1501520
0.0000
jlack-gatkINDELI6_15map_l125_m2_e1homalt
93.7500
100.0000
88.2353
92.4444
1501520
0.0000
jlack-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.5984
99.3135
99.8849
60.1010
173612173622
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8134
99.7514
99.8755
42.5661
16054160522
100.0000