PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47851-47900 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | * | 48.0000 | 33.3333 | 85.7143 | 97.3485 | 6 | 12 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | het | 40.0000 | 27.2727 | 75.0000 | 98.0952 | 3 | 8 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 97.7346 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | het | 33.3333 | 21.4286 | 75.0000 | 98.3607 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | hetalt | 74.2364 | 59.5960 | 98.4127 | 73.9669 | 59 | 40 | 62 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | homalt | 62.1053 | 45.3846 | 98.3333 | 70.5882 | 59 | 71 | 59 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | homalt | 93.7500 | 90.0000 | 97.8261 | 86.1862 | 45 | 5 | 45 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.5909 | 54.8571 | 98.9796 | 54.4186 | 96 | 79 | 97 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.7183 | 56.2500 | 91.6667 | 74.4681 | 9 | 7 | 11 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.4286 | 62.5000 | 83.3333 | 72.7273 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | het | 11.3208 | 6.1224 | 75.0000 | 96.9466 | 3 | 46 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | segdup | * | 85.7143 | 76.5957 | 97.2973 | 90.5852 | 36 | 11 | 36 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | segdup | het | 78.0488 | 66.6667 | 94.1176 | 92.7039 | 16 | 8 | 16 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | * | 98.5994 | 97.7778 | 99.4350 | 29.7619 | 176 | 4 | 176 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | het | 99.1453 | 100.0000 | 98.3051 | 41.0000 | 59 | 0 | 58 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 91.8736 | 85.1464 | 99.7549 | 69.6654 | 407 | 71 | 407 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.9012 | 86.9942 | 99.6689 | 73.6704 | 301 | 45 | 301 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | het | 85.2632 | 74.5399 | 99.5902 | 88.6512 | 243 | 83 | 243 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 88.8889 | 88.8889 | 91.7431 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | het | 84.4311 | 73.4375 | 99.2958 | 91.6716 | 141 | 51 | 141 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 90.9091 | 88.2353 | 93.7500 | 90.8571 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | * | 78.7671 | 65.3409 | 99.1379 | 93.2676 | 115 | 61 | 115 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | homalt | 67.9612 | 52.2388 | 97.2222 | 85.3659 | 35 | 32 | 35 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.7536 | 88.8889 | 96.9697 | 47.6190 | 32 | 4 | 32 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.4855 | 86.9565 | 98.7654 | 53.7143 | 80 | 12 | 80 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 89.3142 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.0412 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 56.1497 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0711 | 95.0820 | 99.1453 | 67.2269 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0973 | 94.2308 | 98.0392 | 54.0541 | 49 | 3 | 50 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 3 | 6 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 74.6483 | 60.2410 | 98.1132 | 32.9114 | 50 | 33 | 52 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8100 | 68.5714 | 95.4545 | 89.7674 | 24 | 11 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.0711 | 95.0820 | 99.1453 | 62.8571 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 84.8485 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 85.7143 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.4035 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.4545 | 95.4545 | 95.4545 | 84.7222 | 21 | 1 | 21 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.7500 | 90.9091 | 96.7742 | 86.6379 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0769 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |