PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47701-47750 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.4286 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 96.4413 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.6744 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.5075 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.3351 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.7654 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 96.8037 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.8947 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 96.8182 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.9058 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 98.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.4252 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.2481 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 99.2857 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.5507 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 99.3056 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| dgrover-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9253 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6524 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5220 | 86.1761 | 99.8768 | 41.7921 | 773 | 124 | 811 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.2244 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 79.2588 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.7295 | 95.5848 | 99.9727 | 30.0745 | 3637 | 168 | 3661 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.8504 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3337 | 62.0112 | 99.2593 | 29.3194 | 111 | 68 | 134 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7814 | 99.6361 | 99.9271 | 72.2301 | 1369 | 5 | 1370 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.4012 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.3471 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6807 | 99.5745 | 99.7872 | 69.0789 | 468 | 2 | 469 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.1212 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 97.1200 | 95.2830 | 99.0291 | 93.8544 | 101 | 5 | 102 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 91.3043 | 87.5000 | 95.4545 | 98.3321 | 21 | 3 | 21 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.9231 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.8276 | 91.6667 | 98.2143 | 97.0727 | 55 | 5 | 55 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3125 | 92.4242 | 98.3871 | 97.2222 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3125 | 92.4242 | 98.3871 | 97.3195 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | HG002compoundhet | hetalt | 96.6156 | 93.4637 | 99.9875 | 29.8618 | 7979 | 558 | 8020 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.0156 | 88.8679 | 99.7963 | 48.3158 | 471 | 59 | 490 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4338 | 99.1525 | 99.7167 | 70.3361 | 351 | 3 | 352 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 69.9029 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.4984 | 89.8072 | 99.7067 | 47.0497 | 326 | 37 | 340 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.3333 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.7599 | 69.8795 | 98.5075 | 30.9278 | 58 | 25 | 66 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6851 | 94.0860 | 99.4318 | 71.1475 | 175 | 11 | 175 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||