PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47601-47650 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 14.2857 | 8.3333 | 50.0000 | 95.1220 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 31.5789 | 20.0000 | 75.0000 | 96.2264 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m0_e0 | homalt | 25.0000 | 16.6667 | 50.0000 | 93.1034 | 1 | 5 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 27.7778 | 16.6667 | 83.3333 | 95.4545 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 27.7778 | 16.6667 | 83.3333 | 96.3190 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 27.7778 | 16.6667 | 83.3333 | 96.3415 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.3856 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.9167 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.8022 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.2759 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 42.5676 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9743 | 99.9743 | 99.9743 | 59.5233 | 3886 | 1 | 3888 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 45.3125 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | decoy | * | 95.2381 | 100.0000 | 90.9091 | 99.9688 | 10 | 0 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9767 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 39.4667 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3932 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.5362 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.4642 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 75.0000 | 75.0000 | 75.0000 | 99.6201 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.8354 | 90.5579 | 99.5370 | 73.1009 | 211 | 22 | 215 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 77.0370 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.4617 | 97.0748 | 99.8889 | 26.7101 | 896 | 27 | 899 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5526 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1111 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7101 | 100.0000 | 99.4220 | 81.3578 | 172 | 0 | 172 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5418 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 50.0000 | 50.0000 | 50.0000 | 99.1071 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6282 | 99.6296 | 99.6269 | 64.6904 | 269 | 1 | 267 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7636 | 100.0000 | 99.5283 | 47.2637 | 211 | 0 | 211 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 85.3659 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.6415 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.9920 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 98.0469 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 99.2754 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.4083 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||