PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46001-46050 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5900 | 97.5610 | 97.6190 | 93.3754 | 40 | 1 | 41 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | homalt | 98.0970 | 97.5000 | 98.7013 | 46.1538 | 78 | 2 | 76 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 85.7143 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 80.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | map_l250_m0_e0 | homalt | 67.7742 | 51.3761 | 99.5475 | 94.9738 | 224 | 212 | 220 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | * | 99.4083 | 100.0000 | 98.8235 | 44.4444 | 85 | 0 | 84 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | HG002complexvar | hetalt | 97.3511 | 95.1613 | 99.6441 | 38.9130 | 295 | 15 | 280 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.5842 | 99.7904 | 53.5992 | 479 | 2 | 476 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 6 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | homalt | 96.0692 | 94.8718 | 97.2973 | 51.3158 | 37 | 2 | 36 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.3077 | 90.0000 | 94.7368 | 99.2146 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 80.0000 | 80.0000 | 99.4331 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.8972 | 93.9872 | 99.9932 | 58.6098 | 14490 | 927 | 14606 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 94.1176 | 94.1176 | 94.1176 | 99.2682 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 75.0000 | 75.0000 | 75.0000 | 99.5354 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.8228 | 93.8496 | 99.9905 | 28.4361 | 10422 | 683 | 10501 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7068 | 93.6325 | 99.9899 | 31.2313 | 9808 | 667 | 9890 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.8883 | 79.0323 | 98.9796 | 99.9286 | 98 | 26 | 97 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9595 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6754 | 93.6402 | 99.9140 | 32.5015 | 1119 | 76 | 1162 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | homalt | 96.7136 | 94.4954 | 99.0385 | 93.9850 | 103 | 6 | 103 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | homalt | 96.8889 | 94.7826 | 99.0909 | 94.5893 | 109 | 6 | 109 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | homalt | 96.9163 | 94.8276 | 99.0991 | 94.6839 | 110 | 6 | 110 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.3970 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.8617 | 90.9091 | 99.1736 | 77.2556 | 120 | 12 | 120 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5739 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.9697 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 73.3215 | 58.4000 | 98.4848 | 34.0000 | 73 | 52 | 65 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 86.9872 | 79.0698 | 96.6667 | 94.6903 | 34 | 9 | 29 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | hetalt | 85.5736 | 75.3846 | 98.9474 | 95.6039 | 98 | 32 | 94 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.5075 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.8235 | 45.4545 | 83.3333 | 84.2105 | 5 | 6 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 81.1020 | 68.6047 | 99.1667 | 72.0280 | 118 | 54 | 119 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 33.3333 | 25.0000 | 50.0000 | 98.4000 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9592 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.8693 | 52.6316 | 91.6667 | 69.2308 | 10 | 9 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 59.5731 | 42.4788 | 99.6904 | 42.1147 | 401 | 543 | 322 | 1 | 1 | 100.0000 | |